Non-Coding RNA Search

Ss1.1-Mixc-0035p07.5

Sequence:


               
               GGAATTTCGTAACCAATGCGCTGGTCCGGACCACCACAGCACTCACCATGTTTAACTCGG
GAATCAAGGTAAATGTCATCCCCGCTGTGGCCCAGGCCATCGTCAACTTCCGGATTCACC
CCGCACAGACTGTCCAGGAGGTCCTAAAACTAGCCAAGGACATTGTGGCGGACGACCGGG
TCCAGTTCCACGTGTTGAATGCCTTTGACCCCTCACCCATCAGCCCCTCTGATGATCAAG
CCTTAGGCTACCAGCTGCTCCGCCAGACCATACAGTCTGTCTTCCCGGAAATCAACATTG
TTGTCCCAGGTACATGTGTTGTCAGCACAGACAGCAAACACTATTTGAACCTCACCACTG
GCATCTACCTGTTCAACCCCCTCTACCTGCAGCCGCAGAGCTTCCGCACCGTGCATGGAA
TCAATGAGAGAATCTCAGTTCAAGCCTACGAGAGGCAAGTGAAGTTCATTTTCGAGTTTA
TCCAGAATGCTGACACAGACCCCAAGCCAGTTCCTCACCTGCATGAACTGTGAGGTCAGG
GAGCCCGCTGGTTTAGGGGTGCCTGATGCTGGGCCAGGACTAACCCAAGGGGAAAGCCGG
TGTTGATGAAGCTTCTGGTCAAAACCACCGTATAAGGGCCTTGCCCACCTGCCTTGATCA
TCCCTAAATTCACCCACGAACAAGGCCAGGGAGAAGTGACGGCCACCAGGAACCCAGCTT
CGCCCTTCCTGCCGACAATGCCATCCTTCAGCAGATGGGCATTTACTGCCTTCTTGTCCA
TAAGTTAGAAGATAGCCGGTTTGTCTGTCTTCCTCTCATCAAGGCCTGATTTAGTAAATG
CAGATTTGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAATTTCGTAACCAATGCGCTGGTCCGGACCACCACAGCACTCACCATGTTTAACTCGG
GAATCAAGGTAAATGTCATCCCCGCTGTGGCCCAGGCCATCGTCAACTTCCGGATTCACC
CCGCACAGACTGTCCAGGAGGTCCTAAAACTAGCCAAGGACATTGTGGCGGACGACCGGG
TCCAGTTCCACGTGTTGAATGCCTTTGACCCCTCACCCATCAGCCCCTCTGATGATCAAG
CCTTAGGCTACCAGCTGCTCCGCCAGACCATACAGTCTGTCTTCCCGGAAATCAACATTG
TTGTCCCAGGTACATGTGTTGTCAGCACAGACAGCAAACACTATTTGAACCTCACCACTG
GCATCTACCTGTTCAACCCCCTCTACCTGCAGCCGCAGAGCTTCCGCACCGTGCATGGAA
TCAATGAGAGAATCTCAGTTCAAGCCTACGAGAGGCAAGTGAAGTTCATTTTCGAGTTTA
TCCAGAATGCTGACACAGACCCCAAGCCAGTTCCTCACCTGCATGAACTGTGAGGTCAGG
GAGCCCGCTGGTTTAGGGGTGCCTGATGCTGGGCCAGGACTAACCCAAGGGGAAAGCCGG
TGTTGATGAAGCTTCTGGTCAAAACCACCGTATAAGGGCCTTGCCCACCTGCCTTGATCA
TCCCTAAATTCACCCACGAACAAGGCCAGGGAGAAGTGACGGCCACCAGGAACCCAGCTT
CGCCCTTCCTGCCGACAATGCCATCCTTCAGCAGATGGGCATTTACTGCCTTCTTGTCCA
TAAGTTAGAAGATAGCCGGTTTGTCTGTCTTCCTCTCATCAAGGCCTGATTTAGTAAATG
CAGATTTGAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|19387947|gb|AAH25830.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|19387947|gb|AAH25830.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               673-790, - strand, RNAz p=0.883994

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               673-790, - strand, RNAz p=0.883994

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               139-326, gnl|bosTau2|chr16 (426630-426443)
               

               
               139-326, gnl|canFam2|chr38 (5254084-5254267)
               

               
               139-326, gnl|fr1|chrUn (207163200-207163024)
               

               
               139-326, gnl|galGal2|chr26 (910037-910249)
               

               
               139-326, gnl|hg17|chr1 (202533381-202533564)
               

               
               139-326, gnl|Hg17|chr1 (202533553-202533366)
               

               
               139-326, gnl|loxAfr1|scaffold_25051 (47159-47346)
               

               
               139-326, gnl|mm7|chr1 (131707679-131707496)
               

               
               139-326, gnl|Mm7|chr1 (131707505-131707692)
               

               
               139-326, gnl|monDom2|scaffold_13 (7728049-7728232)
               

               
               139-326, gnl|oryCun1|scaffold_210492 (3814-3631)
               

               
               139-326, gnl|panTro1|chr1 (185494475-185494659)
               

               
               139-326, gnl|rheMac2|chr1 (164586168-164585985)
               

               
               139-326, gnl|rn3|chr13 (44763498-44763315)
               

               
               139-326, gnl|tetNig1|chr9 (8237925-8238104)
               


               
               401-821, gnl|bosTau2|chr16 (422235-421828)
               

               
               401-821, gnl|Hg17|chr1 (202529537-202529138)
               

               
               401-821, gnl|Mm7|chr1 (131711449-131711860)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               139-326, gnl|bosTau2|chr16 (426630-426443)
               

               
               139-326, gnl|canFam2|chr38 (5254084-5254267)
               

               
               139-326, gnl|fr1|chrUn (207163200-207163024)
               

               
               139-326, gnl|galGal2|chr26 (910037-910249)
               

               
               139-326, gnl|hg17|chr1 (202533381-202533564)
               

               
               139-326, gnl|Hg17|chr1 (202533553-202533366)
               

               
               139-326, gnl|loxAfr1|scaffold_25051 (47159-47346)
               

               
               139-326, gnl|mm7|chr1 (131707679-131707496)
               

               
               139-326, gnl|Mm7|chr1 (131707505-131707692)
               

               
               139-326, gnl|monDom2|scaffold_13 (7728049-7728232)
               

               
               139-326, gnl|oryCun1|scaffold_210492 (3814-3631)
               

               
               139-326, gnl|panTro1|chr1 (185494475-185494659)
               

               
               139-326, gnl|rheMac2|chr1 (164586168-164585985)
               

               
               139-326, gnl|rn3|chr13 (44763498-44763315)
               

               
               139-326, gnl|tetNig1|chr9 (8237925-8238104)
               


               
               401-821, gnl|bosTau2|chr16 (422235-421828)
               

               
               401-821, gnl|Hg17|chr1 (202529537-202529138)
               

               
               401-821, gnl|Mm7|chr1 (131711449-131711860)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cli (0.458435)
               

               
               lun (0.451467)
               

               
               fli (0.405762)
               

               
               cki (0.165235)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (0.458435)
               

               
               lun (0.451467)
               

               
               fli (0.405762)
               

               
               cki (0.165235)

	139-326, gnl\|bosTau2\|chr16 (426630-426443)
	139-326, gnl\|canFam2\|chr38 (5254084-5254267)
	139-326, gnl\|fr1\|chrUn (207163200-207163024)
	139-326, gnl\|galGal2\|chr26 (910037-910249)
	139-326, gnl\|hg17\|chr1 (202533381-202533564)
	139-326, gnl\|Hg17\|chr1 (202533553-202533366)
	139-326, gnl\|loxAfr1\|scaffold_25051 (47159-47346)
	139-326, gnl\|mm7\|chr1 (131707679-131707496)
	139-326, gnl\|Mm7\|chr1 (131707505-131707692)
	139-326, gnl\|monDom2\|scaffold_13 (7728049-7728232)
	139-326, gnl\|oryCun1\|scaffold_210492 (3814-3631)
	139-326, gnl\|panTro1\|chr1 (185494475-185494659)
	139-326, gnl\|rheMac2\|chr1 (164586168-164585985)
	139-326, gnl\|rn3\|chr13 (44763498-44763315)
	139-326, gnl\|tetNig1\|chr9 (8237925-8238104)

	401-821, gnl\|bosTau2\|chr16 (422235-421828)
	401-821, gnl\|Hg17\|chr1 (202529537-202529138)
	401-821, gnl\|Mm7\|chr1 (131711449-131711860)