Non-Coding RNA Search

Ss1.1-Mixc-0036,j03.3

Sequence:


               
               TGAGGACGACTAGGGGACTCCAGACCGATGGCAGAGATGGGTCCCTACGCTCATGTGATG
GGAAATGCAGGGACAATGTTCCTGGCGGTTTTCCAGCTCCCCTCCCTTTCTGGAGAAGAG
ATGCCGTGATCTGTGATGCAGTTAGGATAGTTGTCATTTCCACTTTCTAGATCGAATCTC
TGTGTGTTAGAACGATTTTGACTTGTTCCTTCAATCTTTTTTTTCCTTTCATCACTCTTT
ACATGGTGATGATGTCCAAAAGCCCCCCAAATTTTAGTATTTCCAAAGGATAGCTTCAGC
CTCCGAAGGTTCTGCTGGTAACTTGCAGATTTCCTTAAAAGGCCTTGGCTCATTTTTAAA
AGGAAGGGGTCCATTTCCCTGTTGTATATATGAGAAATGAGTGTGCTTTTGTGCCTCCCA
TCATGTCAGCAGTGCCCCATGTTCGAATATCCACCCTTACTCCTGAATTCTATTACATTT
CTCTGACACAGAAATTATCGGACCCTTTTAGGAAAAGAGGTTCATGTCTTAGTCTGGCCA
CACACTGAGTGGGTATTGTGTACTCTTTAACAGTTTGCCTTTTTCATTTCCTGAGTACTT
AACTTGAAATGGTTACCTATCCTATTTACTTGTTCTGAGTAAGAGTATTTGTTAAGTGAC
TGTTATTCATGGGGTACTCTGGTTCTAAGTAGGGAGACGAGACCAGAAAAGTTGATGAGT
TTTCAGGTGCCACTGAAATGTATCCCTAAAACAGAAGAGAGAGAGATTCCGGGACTCACA
ATAGTGCCTGAAGTACTGCAGCCAAAGACAGAAGATGGCTTGTCACAGCAGAGGGGAAAG
GTGAAAAGGGGGCTTGGAGATGACAGGGGAAGATTGTCCCTGAGCCTGGCAACTGAGCTG
ACTGAGGCCAAGGATGGTTAAGGTCACTCCAGCCCTGAAAATTCTGAAGGAGGGAGGAAT
CTGAACATGTGTTTCCTACCTTGTCCTGTGGTTAGTACCCGAAGCACAGAATCCCCAAGT
GCCTGCTTTTGTTGATGTCTGCAGAAAATGCTAGCTGGTGGGGACACGTTTGCCCTCAAA
TTCCCACTGTGTGTAAAAACTTGAAAATATTTTAAAAATGCGATTTCCCCCCTAGGAAAT
GGAAGAAAAACACGCCCCAAAAGGTGTTAGCAATGGGAGGCGGAGGTAGGGAGAACCTTA
ATTTGGATCTTCTTTTAGTTGAAATACAACCTTCAAGAATGTTTTCACAACCACAGACAA
GAACTTTAAATTGCCTCCCTATCTCTCAACTGTTTTCAGAAGAAAAAGCCATCCCTGCAA
TCACCTCACGGGAATTGTCTTGATTTTTCAGCAGTTGAAACTCTAATGTAGTTCTGTGTA
GAGAATGTCACTGTAGTTTTGCGAGTATATTGCGTGGGTGCTGATAATTTTGTATTTTCT
TTGGGAGTGGAAAAGAAAAACAATTCAAGCTGAAAAAATTATTCTTAAATATTCATTTTT
ATAAATTTTATTAAAGAATTTTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAGGACGACTAGGGGACTCCAGACCGATGGCAGAGATGGGTCCCTACGCTCATGTGATG
GGAAATGCAGGGACAATGTTCCTGGCGGTTTTCCAGCTCCCCTCCCTTTCTGGAGAAGAG
ATGCCGTGATCTGTGATGCAGTTAGGATAGTTGTCATTTCCACTTTCTAGATCGAATCTC
TGTGTGTTAGAACGATTTTGACTTGTTCCTTCAATCTTTTTTTTCCTTTCATCACTCTTT
ACATGGTGATGATGTCCAAAAGCCCCCCAAATTTTAGTATTTCCAAAGGATAGCTTCAGC
CTCCGAAGGTTCTGCTGGTAACTTGCAGATTTCCTTAAAAGGCCTTGGCTCATTTTTAAA
AGGAAGGGGTCCATTTCCCTGTTGTATATATGAGAAATGAGTGTGCTTTTGTGCCTCCCA
TCATGTCAGCAGTGCCCCATGTTCGAATATCCACCCTTACTCCTGAATTCTATTACATTT
CTCTGACACAGAAATTATCGGACCCTTTTAGGAAAAGAGGTTCATGTCTTAGTCTGGCCA
CACACTGAGTGGGTATTGTGTACTCTTTAACAGTTTGCCTTTTTCATTTCCTGAGTACTT
AACTTGAAATGGTTACCTATCCTATTTACTTGTTCTGAGTAAGAGTATTTGTTAAGTGAC
TGTTATTCATGGGGTACTCTGGTTCTAAGTAGGGAGACGAGACCAGAAAAGTTGATGAGT
TTTCAGGTGCCACTGAAATGTATCCCTAAAACAGAAGAGAGAGAGATTCCGGGACTCACA
ATAGTGCCTGAAGTACTGCAGCCAAAGACAGAAGATGGCTTGTCACAGCAGAGGGGAAAG
GTGAAAAGGGGGCTTGGAGATGACAGGGGAAGATTGTCCCTGAGCCTGGCAACTGAGCTG
ACTGAGGCCAAGGATGGTTAAGGTCACTCCAGCCCTGAAAATTCTGAAGGAGGGAGGAAT
CTGAACATGTGTTTCCTACCTTGTCCTGTGGTTAGTACCCGAAGCACAGAATCCCCAAGT
GCCTGCTTTTGTTGATGTCTGCAGAAAATGCTAGCTGGTGGGGACACGTTTGCCCTCAAA
TTCCCACTGTGTGTAAAAACTTGAAAATATTTTAAAAATGCGATTTCCCCCCTAGGAAAT
GGAAGAAAAACACGCCCCAAAAGGTGTTAGCAATGGGAGGCGGAGGTAGGGAGAACCTTA
ATTTGGATCTTCTTTTAGTTGAAATACAACCTTCAAGAATGTTTTCACAACCACAGACAA
GAACTTTAAATTGCCTCCCTATCTCTCAACTGTTTTCAGAAGAAAAAGCCATCCCTGCAA
TCACCTCACGGGAATTGTCTTGATTTTTCAGCAGTTGAAACTCTAATGTAGTTCTGTGTA
GAGAATGTCACTGTAGTTTTGCGAGTATATTGCGTGGGTGCTGATAATTTTGTATTTTCT
TTGGGAGTGGAAAAGAAAAACAATTCAAGCTGAAAAAATTATTCTTAAATATTCATTTTT
ATAAATTTTATTAAAGAATTTTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               777-893, + strand, RNAz p=0.877004

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               777-893, + strand, RNAz p=0.877004

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_004360, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_004360, +

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               2-737, gnl|bosTau2|chr18 (14220834-14220060)
               

               
               2-737, gnl|Hg17|chr16 (67424892-67426159)
               


               
               738-1526, gnl|bosTau2|chr18 (14219916-14219133)
               

               
               738-1526, gnl|Hg17|chr16 (67426168-67426939)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-737, gnl|bosTau2|chr18 (14220834-14220060)
               

               
               2-737, gnl|Hg17|chr16 (67424892-67426159)
               


               
               738-1526, gnl|bosTau2|chr18 (14219916-14219133)
               

               
               738-1526, gnl|Hg17|chr16 (67426168-67426939)

Expressed library(ies): 33 entry(ies)

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Expressed library(ies): 33 entry(ies)

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               ski (0.733676)
               

               
               cst (0.560146)
               

               
               sin (0.524843)
               

               
               rec (0.519211)
               

               
               lun (0.451467)
               

               
               ute (0.398353)
               

               
               bla (0.373042)
               

               
               mgm (0.360685)
               

               
               duo (0.345602)
               

               
               cbl (0.344392)
               

               
               mga (0.32041)
               

               
               cty (0.31224)
               

               
               jej (0.296765)
               

               
               pla (0.267344)
               

               
               lyg (0.266205)
               

               
               cov (0.264306)
               

               
               thg (0.253582)
               

               
               tra (0.246184)
               

               
               pgl (0.236967)
               

               
               mgp (0.230681)
               

               
               fli (0.202881)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               sug (0.127291)
               

               
               clu (0.119646)

Expressed library(ies): 33 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (0.733676)
               

               
               cst (0.560146)
               

               
               sin (0.524843)
               

               
               rec (0.519211)
               

               
               lun (0.451467)
               

               
               ute (0.398353)
               

               
               bla (0.373042)
               

               
               mgm (0.360685)
               

               
               duo (0.345602)
               

               
               cbl (0.344392)
               

               
               mga (0.32041)
               

               
               cty (0.31224)
               

               
               jej (0.296765)
               

               
               pla (0.267344)
               

               
               lyg (0.266205)
               

               
               cov (0.264306)
               

               
               thg (0.253582)
               

               
               tra (0.246184)
               

               
               pgl (0.236967)
               

               
               mgp (0.230681)
               

               
               fli (0.202881)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               sug (0.127291)
               

               
               clu (0.119646)

	2-737, gnl\|bosTau2\|chr18 (14220834-14220060)
	2-737, gnl\|Hg17\|chr16 (67424892-67426159)

	738-1526, gnl\|bosTau2\|chr18 (14219916-14219133)
	738-1526, gnl\|Hg17\|chr16 (67426168-67426939)

	ski (0.733676)
	cst (0.560146)
	sin (0.524843)
	rec (0.519211)
	lun (0.451467)
	ute (0.398353)
	bla (0.373042)
	mgm (0.360685)
	duo (0.345602)
	cbl (0.344392)
	mga (0.32041)
	cty (0.31224)
	jej (0.296765)
	pla (0.267344)
	lyg (0.266205)
	cov (0.264306)
	thg (0.253582)
	tra (0.246184)
	pgl (0.236967)
	mgp (0.230681)
	fli (0.202881)
	col (0.195008)
	cmu (0.186393)
	sag (0.182715)
	cut (0.169924)
	cje (0.165235)
	nco (0.161734)
	cli (0.152812)
	spl (0.143184)
	pty (0.142714)
	csk (0.140746)
	sug (0.127291)
	clu (0.119646)