Ss1.1-Mixc-0036b19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCTGCAGCTGCTGCCGCTGCCTCCTCCTCCTCCTCCTCCTCGTCCTCGTCCTCCACCTC TTCCTCCTCCACCACCACCACCTCCTCCTCTTCCTCCTCCAGCCGCCGCCACCGCTGCCC CTGTGTCTAGTATCCCCTCTGGTCCTCCTTCCTCTCCCAGTTCCTGCTCCTCCTCCTCCT CCCACCCCCGGCGCTTGCTGCCCGGCGGGGAAGGGCAGAACCCGCAGCAGCGGCTCGCCC TCCCTTGGTCCACGAAGAGGCTGGAACAGCCTAGTCCCCCAGCCCATCTGAGCTCGTTTT GAATCTCAACTTTGTTCTTCACCATATTTGATAATCCCTGCCAGCTTTGGGTCATCTTCA GACGTGACTCAAATCCAGGCCAACTGTATGGCTGTCTGAGGTGTTGGAACAGAAGGAGGT CCATTCCTGTTGGTGACAACACTGTGGCCCTGTTCTGGGATGACCAAGGTATAAGGTCAG TGCAGTTTTCACTGGACCATCTGCAGAATGATAATTGGGCAGGTGTGTGATTTGGTACAT GAGGCCTCTGATCAGGGACACCTTTGGGCACAGGGGCCCCTTCTCATGGGCAGCACCCAC CTGTGCTGAGGTCCTGCAGCGGTGGCCGTGTGAGGAGCCGTGCAGTCAGTTGTAACTGAA AATGTCTGACGGTCTGGATAATGAAGAGAAGCCCCCAGCTCCCCCACTGAGGATGAACAG TAACAACCGGGACTCTTCGGCACTCAACCACAGCTCCAAACCACTTCCCATGGCCCCCGA AGAGAAGAATAAGAAAGCCAGGCTCCGCTCTATCTTCCCAGGAGGAGGGGATAAAACCAA TAAGAAGAAAGAGAAAGAACGCCCAGAGATCTCTCTTCCTTCAGACTTTGAACATACGAT TCATGTGGGGTTTGATGCAGTCACCGGGGAATTCACTGGAATTCCTGAGCAATGGGCACG ATTACTCCAAACCTCCAACATAACAAAGCTGGAACAGAAGAAGAACCCACAGGCCGTTCT CGATGTTCTCAAATTCTATGATTCCAAAGAAACAGTCAACAACCAGAAATACATGAGCTT TACATCAGGAGATAAAAGCGCACATGGATACATAGCAGCCCATCCTTCGAGTACAAAAAC AGCGTCAGAGCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCTGCAGCTGCTGCCGCTGCCTCCTCCTCCTCCTCCTCCTCGTCCTCGTCCTCCACCTC TTCCTCCTCCACCACCACCACCTCCTCCTCTTCCTCCTCCAGCCGCCGCCACCGCTGCCC CTGTGTCTAGTATCCCCTCTGGTCCTCCTTCCTCTCCCAGTTCCTGCTCCTCCTCCTCCT CCCACCCCCGGCGCTTGCTGCCCGGCGGGGAAGGGCAGAACCCGCAGCAGCGGCTCGCCC TCCCTTGGTCCACGAAGAGGCTGGAACAGCCTAGTCCCCCAGCCCATCTGAGCTCGTTTT GAATCTCAACTTTGTTCTTCACCATATTTGATAATCCCTGCCAGCTTTGGGTCATCTTCA GACGTGACTCAAATCCAGGCCAACTGTATGGCTGTCTGAGGTGTTGGAACAGAAGGAGGT CCATTCCTGTTGGTGACAACACTGTGGCCCTGTTCTGGGATGACCAAGGTATAAGGTCAG TGCAGTTTTCACTGGACCATCTGCAGAATGATAATTGGGCAGGTGTGTGATTTGGTACAT GAGGCCTCTGATCAGGGACACCTTTGGGCACAGGGGCCCCTTCTCATGGGCAGCACCCAC CTGTGCTGAGGTCCTGCAGCGGTGGCCGTGTGAGGAGCCGTGCAGTCAGTTGTAACTGAA AATGTCTGACGGTCTGGATAATGAAGAGAAGCCCCCAGCTCCCCCACTGAGGATGAACAG TAACAACCGGGACTCTTCGGCACTCAACCACAGCTCCAAACCACTTCCCATGGCCCCCGA AGAGAAGAATAAGAAAGCCAGGCTCCGCTCTATCTTCCCAGGAGGAGGGGATAAAACCAA TAAGAAGAAAGAGAAAGAACGCCCAGAGATCTCTCTTCCTTCAGACTTTGAACATACGAT TCATGTGGGGTTTGATGCAGTCACCGGGGAATTCACTGGAATTCCTGAGCAATGGGCACG ATTACTCCAAACCTCCAACATAACAAAGCTGGAACAGAAGAAGAACCCACAGGCCGTTCT CGATGTTCTCAAATTCTATGATTCCAAAGAAACAGTCAACAACCAGAAATACATGAGCTT TACATCAGGAGATAAAAGCGCACATGGATACATAGCAGCCCATCCTTCGAGTACAAAAAC AGCGTCAGAGCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 366-522, + strand, RNAz p=0.923809 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 366-522, + strand, RNAz p=0.923809 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_002578, + |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 366-577, gnl|bosTau2|chrX (19262085-19262293) | |
| 366-577, gnl|Hg17|chrX (110146947-110147160) | |
| 366-577, gnl|Mm7|chrX (138330052-138330265) | |
| 633-836, gnl|bosTau2|chrX (19288074-19288277) | |
| 633-836, gnl|Hg17|chrX (110172448-110172651) | |
| 633-836, gnl|Mm7|chrX (138357605-138357808) | |
| 938-1095, gnl|bosTau2|chrX (19317547-19317704) | |
| 938-1095, gnl|canFam2|chrX (87331980-87332153) | |
| 938-1095, gnl|danRer3|chr15 (3273185-3273014) | |
| 938-1095, gnl|dasNov1|scaffold_9906 (58497-58669) | |
| 938-1095, gnl|echTel1|scaffold_190886 (5090-5263) | |
| 938-1095, gnl|fr1|chrUn (4546531-4546362) | |
| 938-1095, gnl|galGal2|chr4 (13164608-13164436) | |
| 938-1095, gnl|hg17|chrX (110197084-110197257) | |
| 938-1095, gnl|Hg17|chrX (110197110-110197267) | |
| 938-1095, gnl|loxAfr1|scaffold_901 (138188-138015) | |
| 938-1095, gnl|mm7|chrX (138379430-138379603) | |
| 938-1095, gnl|Mm7|chrX (138379456-138379613) | |
| 938-1095, gnl|monDom2|scaffold_117 (3133628-3133462) | |
| 938-1095, gnl|oryCun1|scaffold_199253 (246972-246799) | |
| 938-1095, gnl|panTro1|chrX (113930713-113930886) | |
| 938-1095, gnl|rheMac2|chrX (109822229-109822402) | |
| 938-1095, gnl|rn3|chrX (34847426-34847253) | |
| 938-1095, gnl|tetNig1|chr7 (4529031-4529192) | |
| 938-1095, gnl|xenTro1|scaffold_646 (373978-373817) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 366-577, gnl|bosTau2|chrX (19262085-19262293) | |
| 366-577, gnl|Hg17|chrX (110146947-110147160) | |
| 366-577, gnl|Mm7|chrX (138330052-138330265) | |
| 633-836, gnl|bosTau2|chrX (19288074-19288277) | |
| 633-836, gnl|Hg17|chrX (110172448-110172651) | |
| 633-836, gnl|Mm7|chrX (138357605-138357808) | |
| 938-1095, gnl|bosTau2|chrX (19317547-19317704) | |
| 938-1095, gnl|canFam2|chrX (87331980-87332153) | |
| 938-1095, gnl|danRer3|chr15 (3273185-3273014) | |
| 938-1095, gnl|dasNov1|scaffold_9906 (58497-58669) | |
| 938-1095, gnl|echTel1|scaffold_190886 (5090-5263) | |
| 938-1095, gnl|fr1|chrUn (4546531-4546362) | |
| 938-1095, gnl|galGal2|chr4 (13164608-13164436) | |
| 938-1095, gnl|hg17|chrX (110197084-110197257) | |
| 938-1095, gnl|Hg17|chrX (110197110-110197267) | |
| 938-1095, gnl|loxAfr1|scaffold_901 (138188-138015) | |
| 938-1095, gnl|mm7|chrX (138379430-138379603) | |
| 938-1095, gnl|Mm7|chrX (138379456-138379613) | |
| 938-1095, gnl|monDom2|scaffold_117 (3133628-3133462) | |
| 938-1095, gnl|oryCun1|scaffold_199253 (246972-246799) | |
| 938-1095, gnl|panTro1|chrX (113930713-113930886) | |
| 938-1095, gnl|rheMac2|chrX (109822229-109822402) | |
| 938-1095, gnl|rn3|chrX (34847426-34847253) | |
| 938-1095, gnl|tetNig1|chr7 (4529031-4529192) | |
| 938-1095, gnl|xenTro1|scaffold_646 (373978-373817) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hyp (0.142837) | |
| ebs (0.118301) |