Non-Coding RNA Search

Ss1.1-Mixc-0036d18.5

Sequence:


               
               AGGACCCGAGCGGCATGGTGACCATCATCACAGGCCTTCCACTGGACAACCCTAGCGCGC
TCTCAGGCCCTATGCAGGCAGCCTTGCAGGCCGCTGCTCATGCCAGTGTGGACATCAAGA
ATGTTCTGGATTTCTACAAGCAGTGGAAGGAGATTGGTTGAGACCGACCCCCAGGCCCTG
CAGCGGGGCTGACTCCAGATCTCTCCTGCCCTCCCTGGCAGCCAGGACCACCACCTGTAG
TCATCCCACCACACGCAGACTCACGCACGCACACAGGAAGGAAGCCCAGCTGCATACAGG
CTGCAAGGAGGGCCCAGGAGCCAGCTGGGAGGGCGGGGTAACCCCTGTTGCCAAGACGAC
GTCAGGAAGGCAAGGAAGGTGCTTGGAGCAGGAGAGGCCTGTGGGCCCCTAGGCAGCCTT
CCTGCCTCAGCCCCCTGTTTTCCCCAGGGGCAGGTGGCAGGCACGGGTGTCTGCGTTTCA
TTGGAGTGATTCCTGGACCTCTGAGGGGAGGGGACAGCAGAAGGGGCCCTTCTGCTTCAC
CCAAGATGCAGGGTGGTTGGTGCCGGGAGTTTGGGCCCTCCAGCTCTGGGGGAAGAGTGG
GTAATTCCAGGTATCTGGGTGGGTTCTCTGCAGACCCTTCCTCTCCTCAAGGACCACCCA
TCCCCGTCTCATCTCCCTTTGCAAAGGCTGGGCAGCTCTGGAGCCTTGGGGACTCTGAGA
GAAGAGGGACCTGGAGCTGGCTGCATTGACAGCAAGGCGGGGCTTAGATCCCCTCCTCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGACCCGAGCGGCATGGTGACCATCATCACAGGCCTTCCACTGGACAACCCTAGCGCGC
TCTCAGGCCCTATGCAGGCAGCCTTGCAGGCCGCTGCTCATGCCAGTGTGGACATCAAGA
ATGTTCTGGATTTCTACAAGCAGTGGAAGGAGATTGGTTGAGACCGACCCCCAGGCCCTG
CAGCGGGGCTGACTCCAGATCTCTCCTGCCCTCCCTGGCAGCCAGGACCACCACCTGTAG
TCATCCCACCACACGCAGACTCACGCACGCACACAGGAAGGAAGCCCAGCTGCATACAGG
CTGCAAGGAGGGCCCAGGAGCCAGCTGGGAGGGCGGGGTAACCCCTGTTGCCAAGACGAC
GTCAGGAAGGCAAGGAAGGTGCTTGGAGCAGGAGAGGCCTGTGGGCCCCTAGGCAGCCTT
CCTGCCTCAGCCCCCTGTTTTCCCCAGGGGCAGGTGGCAGGCACGGGTGTCTGCGTTTCA
TTGGAGTGATTCCTGGACCTCTGAGGGGAGGGGACAGCAGAAGGGGCCCTTCTGCTTCAC
CCAAGATGCAGGGTGGTTGGTGCCGGGAGTTTGGGCCCTCCAGCTCTGGGGGAAGAGTGG
GTAATTCCAGGTATCTGGGTGGGTTCTCTGCAGACCCTTCCTCTCCTCAAGGACCACCCA
TCCCCGTCTCATCTCCCTTTGCAAAGGCTGGGCAGCTCTGGAGCCTTGGGGACTCTGAGA
GAAGAGGGACCTGGAGCTGGCTGCATTGACAGCAAGGCGGGGCTTAGATCCCCTCCTCCT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               75-313, - strand, RNAz p=0.943345
               

               
               468-738, + strand, RNAz p=0.99984

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               75-313, - strand, RNAz p=0.943345
               

               
               468-738, + strand, RNAz p=0.99984

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               332-483, - strand, RNAmicro p=0.998533
               

               
               167-262, - strand, RNAmicro p=0.995407

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               332-483, - strand, RNAmicro p=0.998533
               

               
               167-262, - strand, RNAmicro p=0.995407

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_015327, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_015327, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               75-780, gnl|bosTau2|chr3 (10391363-10392057)
               

               
               75-780, gnl|Hg17|chr1 (153033537-153032826)
               

               
               75-780, gnl|Mm7|chr3 (88474823-88475497)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               75-780, gnl|bosTau2|chr3 (10391363-10392057)
               

               
               75-780, gnl|Hg17|chr1 (153033537-153032826)
               

               
               75-780, gnl|Mm7|chr3 (88474823-88475497)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ese (0.126502)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.126502)

	75-313, - strand, RNAz p=0.943345
	468-738, + strand, RNAz p=0.99984

	332-483, - strand, RNAmicro p=0.998533
	167-262, - strand, RNAmicro p=0.995407

	75-780, gnl\|bosTau2\|chr3 (10391363-10392057)
	75-780, gnl\|Hg17\|chr1 (153033537-153032826)
	75-780, gnl\|Mm7\|chr3 (88474823-88475497)