Non-Coding RNA Search

Ss1.1-Mixc-0036e01.5

Sequence:


               
               CTGCCTTTCTCAACTCAGATTGTCTTATGTTAAAAATGGGTATAGTGAGGCCGCCCAGAG
TCACATAGACTCAGACTCAGACACTGCAGAGCACCTGGTGGCTCGCTACCACATACACTT
CCTCCACCGTGTTCCGTCTTATATTTTAGAGCCAGGCTACTGCCCTGTGAGACTGGGCAT
GACAACTGGAAGACTGCAGTCTGGGGTGAATACTTTGCAGGGGTTCAAAGAAGATAAAAG
GAACAAAGTAACTCCAGGTAAGGCTCCCACATGGTGGTGGTTTTTTCTTTTCTCTCTTTC
AGGGAATAGGGGGAAGATGCATAATTACCATGAATTGCTTTATACACTAACTCTCTTTAT
GATATTTTTGCAACATTAGTTAGCTGTTTTTTTAAGGAGAAACAGGAGTTCCTGCTATGG
CACAGTAGGTTAAGGATCCAGCTGCTCAGGTCATTGGCGAGGTGTAGCTTCAGTCCCTGG
CCTGGCTCAGTGAATTAAGAATCTGGCATTGCCACAGCTGTGGCATAGGTCACAACAGCA
GCTCAGATTCAGTCCCTAGCCCAGGAACTTCGTATGCTATGGGTACGGCCAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCCTTTCTCAACTCAGATTGTCTTATGTTAAAAATGGGTATAGTGAGGCCGCCCAGAG
TCACATAGACTCAGACTCAGACACTGCAGAGCACCTGGTGGCTCGCTACCACATACACTT
CCTCCACCGTGTTCCGTCTTATATTTTAGAGCCAGGCTACTGCCCTGTGAGACTGGGCAT
GACAACTGGAAGACTGCAGTCTGGGGTGAATACTTTGCAGGGGTTCAAAGAAGATAAAAG
GAACAAAGTAACTCCAGGTAAGGCTCCCACATGGTGGTGGTTTTTTCTTTTCTCTCTTTC
AGGGAATAGGGGGAAGATGCATAATTACCATGAATTGCTTTATACACTAACTCTCTTTAT
GATATTTTTGCAACATTAGTTAGCTGTTTTTTTAAGGAGAAACAGGAGTTCCTGCTATGG
CACAGTAGGTTAAGGATCCAGCTGCTCAGGTCATTGGCGAGGTGTAGCTTCAGTCCCTGG
CCTGGCTCAGTGAATTAAGAATCTGGCATTGCCACAGCTGTGGCATAGGTCACAACAGCA
GCTCAGATTCAGTCCCTAGCCCAGGAACTTCGTATGCTATGGGTACGGCCAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|5670263|gb|AAD46658.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|5670263|gb|AAD46658.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               161-317, + strand, RNAz p=0.692063

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               161-317, + strand, RNAz p=0.692063

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               81-403, gnl|bosTau2|chr18 (17910963-17910652)
               

               
               81-403, gnl|Hg17|chr16 (48917872-48917542)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               81-403, gnl|bosTau2|chr18 (17910963-17910652)
               

               
               81-403, gnl|Hg17|chr16 (48917872-48917542)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eje (0.0988338)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eje (0.0988338)

	81-403, gnl\|bosTau2\|chr18 (17910963-17910652)
	81-403, gnl\|Hg17\|chr16 (48917872-48917542)