Non-Coding RNA Search

Ss1.1-Mixc-0036g21.3

Sequence:


               
               GGAGCAGAATAAGGTGCTGCACGGCGGCCCCTGTGAGCAGACATCTCACCCCTACCAAGT
TGCCCTCTATGTCTCTGGCCACCTGCTCTGCGGCGGGGTCCTTATCCATCCGCTGTGGGT
CCTCACCGCTGCTCATTGCAAAAAACCGAATCTTCAGGTCTATCTGGGGAAGCACAACCT
TCAGCAAAGGGAGAGTTTCCAGGAGCAGAGTTCTGTTGTCCGGACCGTGGTCCACCCTGG
CTACAATTCCGCCACCCATGACCAGGACATCATGCTGCTGCGCCTGTCGCATCCAGCTCG
ACTCTCTGAACACATCCAGCCCCTGGCCCTGGAAAGAGACTGCTCGGCCAACTACACCAG
CTGCCACATCCTAGGCTGGGGCAAGACGGCAGAGGGTGATTTCCCTAACACCATCCAGTG
TGCATACCTCCACCTGGTGCCCCGGAAGGAGTGTGAGCGTGCCTACCCTGGCCAGATCAC
CCAGAACATGGTGTGCGCCGGGGATGAGAAGTATGGGAAGGATTCCTGCCAGGGTGATTC
TGGGGGTCCACTCGTGTGTCGTGACCATCTCCGAGGCCTGGTGTCATGGGGTAATGTCCC
CTGTGGATCCAAGGAGAAGCCAGGGGTCTACACTGACGTCTGCAGATACGGCCACTGGAT
CCAAAAAAACCATTCAGGCCAACTGATCCTATCATGTGACTTCCAACTCTTGAGCTGCCC
CCACTCCACCTACCCAGACTCAACCCTTAATGCTTAATAAAGGCAGTGACACCACAGCAC
AGAAACTCCCTGATTTTACCCCAGCCCCATCCTTGCATCACAGCAGGGTGAGCAGGGATG
TGGGCTGAGATCCCACCCCCGCCCCTAAGAGAAGACAGGATAATGCCCTCCAAGCCTCTC
TCCCTCCTTGATTTTTCCACGGGCTTGATTTCTTTCTGCGGAGGAGTGGTCCCAAGTCGG
GCCAAATCCCAGTTGGGGGGTCCCAGCTCTGCCTCTTGCCTCCCTTCACGGTACAGATTT
TCTCATCTGTCGAACAAGCATAATATCGTTGATTCCTCATAAGAAGATGGCTTTGGGGAG
ATTCAAGGTTGTGAACATGTGACACATCCAAGAGTGCCTGGCACCCCGGGGCGAACAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGCAGAATAAGGTGCTGCACGGCGGCCCCTGTGAGCAGACATCTCACCCCTACCAAGT
TGCCCTCTATGTCTCTGGCCACCTGCTCTGCGGCGGGGTCCTTATCCATCCGCTGTGGGT
CCTCACCGCTGCTCATTGCAAAAAACCGAATCTTCAGGTCTATCTGGGGAAGCACAACCT
TCAGCAAAGGGAGAGTTTCCAGGAGCAGAGTTCTGTTGTCCGGACCGTGGTCCACCCTGG
CTACAATTCCGCCACCCATGACCAGGACATCATGCTGCTGCGCCTGTCGCATCCAGCTCG
ACTCTCTGAACACATCCAGCCCCTGGCCCTGGAAAGAGACTGCTCGGCCAACTACACCAG
CTGCCACATCCTAGGCTGGGGCAAGACGGCAGAGGGTGATTTCCCTAACACCATCCAGTG
TGCATACCTCCACCTGGTGCCCCGGAAGGAGTGTGAGCGTGCCTACCCTGGCCAGATCAC
CCAGAACATGGTGTGCGCCGGGGATGAGAAGTATGGGAAGGATTCCTGCCAGGGTGATTC
TGGGGGTCCACTCGTGTGTCGTGACCATCTCCGAGGCCTGGTGTCATGGGGTAATGTCCC
CTGTGGATCCAAGGAGAAGCCAGGGGTCTACACTGACGTCTGCAGATACGGCCACTGGAT
CCAAAAAAACCATTCAGGCCAACTGATCCTATCATGTGACTTCCAACTCTTGAGCTGCCC
CCACTCCACCTACCCAGACTCAACCCTTAATGCTTAATAAAGGCAGTGACACCACAGCAC
AGAAACTCCCTGATTTTACCCCAGCCCCATCCTTGCATCACAGCAGGGTGAGCAGGGATG
TGGGCTGAGATCCCACCCCCGCCCCTAAGAGAAGACAGGATAATGCCCTCCAAGCCTCTC
TCCCTCCTTGATTTTTCCACGGGCTTGATTTCTTTCTGCGGAGGAGTGGTCCCAAGTCGG
GCCAAATCCCAGTTGGGGGGTCCCAGCTCTGCCTCTTGCCTCCCTTCACGGTACAGATTT
TCTCATCTGTCGAACAAGCATAATATCGTTGATTCCTCATAAGAAGATGGCTTTGGGGAG
ATTCAAGGTTGTGAACATGTGACACATCCAAGAGTGCCTGGCACCCCGGGGCGAACAATA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|30582543|gb|AAP35498.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|30582543|gb|AAP35498.1|

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               148-397, gnl|bosTau2|chr18 (52185039-52184790)
               

               
               148-397, gnl|Hg17|chr19 (56158617-56158368)
               

               
               148-397, gnl|Mm7|chr7 (40003327-40003576)
               


               
               530-999, gnl|bosTau2|chr18 (52182097-52181630)
               

               
               530-999, gnl|Hg17|chr19 (56154387-56153884)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               148-397, gnl|bosTau2|chr18 (52185039-52184790)
               

               
               148-397, gnl|Hg17|chr19 (56158617-56158368)
               

               
               148-397, gnl|Mm7|chr7 (40003327-40003576)
               


               
               530-999, gnl|bosTau2|chr18 (52182097-52181630)
               

               
               530-999, gnl|Hg17|chr19 (56154387-56153884)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               hyp (0.142837)
               

               
               pla (0.133672)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)
               

               
               pla (0.133672)

	148-397, gnl\|bosTau2\|chr18 (52185039-52184790)
	148-397, gnl\|Hg17\|chr19 (56158617-56158368)
	148-397, gnl\|Mm7\|chr7 (40003327-40003576)

	530-999, gnl\|bosTau2\|chr18 (52182097-52181630)
	530-999, gnl\|Hg17\|chr19 (56154387-56153884)