Non-Coding RNA Search

Ss1.1-Mixc-0036j02.3

Sequence:


               
               AATCTGCATGAACAGCTAATTGTACCATAGTGTTCATTGATACAATCATAGCATTGTCTG
TTTTTCTCTTCATATTTATATGGGGGGAGGGGAGCCAGGCACAGAAGTCGAAGATTGCGA
TGGTCTGATACTAGTTTTCTATAGCTGATTTTGAGAGGTCTTAAGCAACAGAGCAAGGTT
GACTCACCTATGGCCCAGGGAATTTGGCTGGGTTAAGCCACCCTTTAGAAGGCCTTGTTG
AAAGAAAGCATGGCATCTTGTACCACTTGCCCGGACTCTCGCAACTCCTGAGCTCAACAT
CGCCTGCTTCCCTATCCCCTTCTTCTTGAGAGACAATTTCTGGGAGGAGACAAGTGAGCA
AGCTCAGGAGAATGCTGCAACCTCGGGAGTGGTTTTATTTATTTCTTTTTTGCCAAATAG
AGTGTGGATGTGTTCTAGGGACTAGCTAAGCCAAAAGGCGGTGGTTTGGGCTCACTGTAT
GTGACAAGGAAAATGGTCCACACCACTCCCCCCACCCCTGGGTGCGGAATTGTGACTCAG
GGTTGGGCCTCCACATGGAGTGACCAAAATGCCAAACTTGTCCACCCGCCTCTGGGTAAG
GCAATGGAAATACCAAACCTTCTGACTTTGCCAAAAACCATGCAACCAACCTGGTCATAC
ATAGGATGACAAAATTCTTTCTGGTTGTTTTAAAAATAATAAAGCAATAAGAACAAATAA
GATACATAGGAAATTAAAAGATGTAAAATAAAGCACAAAGGAATGCACTTATTAATTTTT
TTAAAAGATGCACTGGGAAAAAGATGTTGATAACAGTATATAAAAAAAAACCCCTGTTTC
TTGAAAAAAAAAATGACAAATGACTGTCTCTTGCGGACGCTTGGTACTGTAATGTTAATA
CTAGTCACCTGCTGTTGGATGCAGCAATAATTTCTGTGTGGTCCATAGCACTGTATATTA
TGGATCGATATTAATGTATCCAATGAAATAATTGAACTGTTGTTCTTGATAGCCTCATTA
AAGCATTTGGTTTTTCAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATCTGCATGAACAGCTAATTGTACCATAGTGTTCATTGATACAATCATAGCATTGTCTG
TTTTTCTCTTCATATTTATATGGGGGGAGGGGAGCCAGGCACAGAAGTCGAAGATTGCGA
TGGTCTGATACTAGTTTTCTATAGCTGATTTTGAGAGGTCTTAAGCAACAGAGCAAGGTT
GACTCACCTATGGCCCAGGGAATTTGGCTGGGTTAAGCCACCCTTTAGAAGGCCTTGTTG
AAAGAAAGCATGGCATCTTGTACCACTTGCCCGGACTCTCGCAACTCCTGAGCTCAACAT
CGCCTGCTTCCCTATCCCCTTCTTCTTGAGAGACAATTTCTGGGAGGAGACAAGTGAGCA
AGCTCAGGAGAATGCTGCAACCTCGGGAGTGGTTTTATTTATTTCTTTTTTGCCAAATAG
AGTGTGGATGTGTTCTAGGGACTAGCTAAGCCAAAAGGCGGTGGTTTGGGCTCACTGTAT
GTGACAAGGAAAATGGTCCACACCACTCCCCCCACCCCTGGGTGCGGAATTGTGACTCAG
GGTTGGGCCTCCACATGGAGTGACCAAAATGCCAAACTTGTCCACCCGCCTCTGGGTAAG
GCAATGGAAATACCAAACCTTCTGACTTTGCCAAAAACCATGCAACCAACCTGGTCATAC
ATAGGATGACAAAATTCTTTCTGGTTGTTTTAAAAATAATAAAGCAATAAGAACAAATAA
GATACATAGGAAATTAAAAGATGTAAAATAAAGCACAAAGGAATGCACTTATTAATTTTT
TTAAAAGATGCACTGGGAAAAAGATGTTGATAACAGTATATAAAAAAAAACCCCTGTTTC
TTGAAAAAAAAAATGACAAATGACTGTCTCTTGCGGACGCTTGGTACTGTAATGTTAATA
CTAGTCACCTGCTGTTGGATGCAGCAATAATTTCTGTGTGGTCCATAGCACTGTATATTA
TGGATCGATATTAATGTATCCAATGAAATAATTGAACTGTTGTTCTTGATAGCCTCATTA
AAGCATTTGGTTTTTCAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               1-150, - strand, RNAz p=0.982707
               

               
               266-385, - strand, RNAz p=0.996257
               

               
               466-736, - strand, RNAz p=0.990035

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-150, - strand, RNAz p=0.982707
               

               
               266-385, - strand, RNAz p=0.996257
               

               
               466-736, - strand, RNAz p=0.990035

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1037, gnl|bosTau2|chr22 (25497303-25496269)
               

               
               1-1037, gnl|Hg17|chr3 (70099161-70100173)
               

               
               1-1037, gnl|Mm7|chr6 (98108387-98109430)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1037, gnl|bosTau2|chr22 (25497303-25496269)
               

               
               1-1037, gnl|Hg17|chr3 (70099161-70100173)
               

               
               1-1037, gnl|Mm7|chr6 (98108387-98109430)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               bla (0.373042)
               

               
               fat (0.294855)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               cki (0.165235)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               ssp (0.13552)
               

               
               ova (0.129132)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.373042)
               

               
               fat (0.294855)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               cki (0.165235)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               ssp (0.13552)
               

               
               ova (0.129132)

	1-150, - strand, RNAz p=0.982707
	266-385, - strand, RNAz p=0.996257
	466-736, - strand, RNAz p=0.990035

	1-1037, gnl\|bosTau2\|chr22 (25497303-25496269)
	1-1037, gnl\|Hg17\|chr3 (70099161-70100173)
	1-1037, gnl\|Mm7\|chr6 (98108387-98109430)

	bla (0.373042)
	fat (0.294855)
	hea (0.204499)
	aor (0.195274)
	cki (0.165235)
	fco (0.157208)
	isp (0.150376)
	ssp (0.13552)
	ova (0.129132)