Non-Coding RNA Search

Ss1.1-Mixc-0036k01.5

Sequence:


               
               TAATCCTCTTGAGATTACGGTGCTGAAAGGCGGACCCCGCCACCTCGGTTAGCGCCCCGC
GCCGAGGGAAACGGCCCTCAAGCTGGTTCTTCCCCGCGGGCTCTCCCTGCACCTCTGTCC
TTTCGGTGTTTAATTCATGGGCTTTTTTTTTTTTTTTTTTTTTTTAATTTTTTTCCATTT
ATTTTTCTCTCCTCTTGATTGGAAGGCCCCGAGGGAGGCTCTGCGTCTCTGCCCCTCCTC
GTCCTTTCCTCTCCCCCGCACGAATCGCCGATCCACCTGCCTCCCGCCGGGCATGGCCCC
ACAGTGACGGCGGCGGGCGCCGGACCACACGCCGACCGGGGGCCCTCGCCCAGGCTGCTG
TAAATACACACTCCCCTCTCTACTCTTCTCTTCGATTTCTGAGCTCTCTGCAAAGAGAGA
AAGCAGGGAAAGATGTGGCTGAAGCTTTTTTTCCTGCTCCTCTATTTTCTGGTCCTTTTC
GTCCTGGCCAGGTTTTTTGAAGCCATTGTGTGGTATGAAACTGGCATCTTTGCCACCCAG
CTGGTGGATCCGGTGGCACTGAGCTTCAAGAAGCTGAAGACCATTCTGGAGTGCCGGGGA
TTGGGATACTCGGGGTTACCCGAGAAGAAGGACGTCCGGGAACTGGTGGAAAAGTCAGGT
GATCTGATGGAAGGTGAGCTCTATTCTGCACTCAAAGAAGAAGAAGCATCTGAATCTGTT
TCTAGTACCAATTTCAGTGGTGAAATGCACTTCTATGAGCTTGTAGAAGACACAAAAGAT
GGCATCTGGCTGGTTCAGGTCATAGCAAATGAAAGAAGTCCTTTGGTGGGTAAAATCCAC
TGGGAGAAAATGGTGAAAAAGGTGTCAAGATTTGGAATACGTACAGGCACGTTTAACTGT
TCCAGTGATCCCAGATACTGCAGGAGAAGAGGCTGGGTGCGATCCACACTCATTATGTCT
GTTCCACAAACGAGTACTTCTAAAGGGAAAGTCATGCTTAAAGAATACAGTGGGCGCAAG
ATTGAAGTAGAGCACATTTTTAAGTGGATAACTGCGCATGCAGCTTCTCGGATCAAAACC
ATTTATGATGCTGAACATTTGAAAGAAGAATGGAATAAAAGTGATCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAATCCTCTTGAGATTACGGTGCTGAAAGGCGGACCCCGCCACCTCGGTTAGCGCCCCGC
GCCGAGGGAAACGGCCCTCAAGCTGGTTCTTCCCCGCGGGCTCTCCCTGCACCTCTGTCC
TTTCGGTGTTTAATTCATGGGCTTTTTTTTTTTTTTTTTTTTTTTAATTTTTTTCCATTT
ATTTTTCTCTCCTCTTGATTGGAAGGCCCCGAGGGAGGCTCTGCGTCTCTGCCCCTCCTC
GTCCTTTCCTCTCCCCCGCACGAATCGCCGATCCACCTGCCTCCCGCCGGGCATGGCCCC
ACAGTGACGGCGGCGGGCGCCGGACCACACGCCGACCGGGGGCCCTCGCCCAGGCTGCTG
TAAATACACACTCCCCTCTCTACTCTTCTCTTCGATTTCTGAGCTCTCTGCAAAGAGAGA
AAGCAGGGAAAGATGTGGCTGAAGCTTTTTTTCCTGCTCCTCTATTTTCTGGTCCTTTTC
GTCCTGGCCAGGTTTTTTGAAGCCATTGTGTGGTATGAAACTGGCATCTTTGCCACCCAG
CTGGTGGATCCGGTGGCACTGAGCTTCAAGAAGCTGAAGACCATTCTGGAGTGCCGGGGA
TTGGGATACTCGGGGTTACCCGAGAAGAAGGACGTCCGGGAACTGGTGGAAAAGTCAGGT
GATCTGATGGAAGGTGAGCTCTATTCTGCACTCAAAGAAGAAGAAGCATCTGAATCTGTT
TCTAGTACCAATTTCAGTGGTGAAATGCACTTCTATGAGCTTGTAGAAGACACAAAAGAT
GGCATCTGGCTGGTTCAGGTCATAGCAAATGAAAGAAGTCCTTTGGTGGGTAAAATCCAC
TGGGAGAAAATGGTGAAAAAGGTGTCAAGATTTGGAATACGTACAGGCACGTTTAACTGT
TCCAGTGATCCCAGATACTGCAGGAGAAGAGGCTGGGTGCGATCCACACTCATTATGTCT
GTTCCACAAACGAGTACTTCTAAAGGGAAAGTCATGCTTAAAGAATACAGTGGGCGCAAG
ATTGAAGTAGAGCACATTTTTAAGTGGATAACTGCGCATGCAGCTTCTCGGATCAAAACC
ATTTATGATGCTGAACATTTGAAAGAAGAATGGAATAAAAGTGATCAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61829550|ref|XP_589898.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61829550|ref|XP_589898.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               402-639, - strand, RNAz p=0.99031

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               402-639, - strand, RNAz p=0.99031

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

Help | Less info


               
               254-659, gnl|bosTau2|chr11 (35319323-35318932)
               

               
               254-659, gnl|canFam2|chr17 (41615105-41614852)
               

               
               254-659, gnl|danRer3|chr14 (14155673-14155414)
               

               
               254-659, gnl|echTel1|scaffold_206313 (3734-3956)
               

               
               254-659, gnl|galGal2|chr4 (85722923-85723167)
               

               
               254-659, gnl|hg17|chr2 (86761434-86761687)
               

               
               254-659, gnl|Hg17|chr2 (86761854-86761441)
               

               
               254-659, gnl|loxAfr1|scaffold_64738 (854-1105)
               

               
               254-659, gnl|mm7|chr6 (71512829-71512573)
               

               
               254-659, gnl|Mm7|chr6 (71512436-71512820)
               

               
               254-659, gnl|monDom2|scaffold_63 (890477-890728)
               

               
               254-659, gnl|oryCun1|scaffold_211666 (33549-33296)
               

               
               254-659, gnl|panTro1|chr12 (89644492-89644745)
               

               
               254-659, gnl|rheMac2|chr13 (87248500-87248753)
               

               
               254-659, gnl|rn3|chr4 (105006929-105006673)
               

               
               254-659, gnl|xenTro1|scaffold_149 (695342-695579)
               


               
               912-1128, gnl|bosTau2|chr11 (35298870-35298654)
               

               
               912-1128, gnl|Hg17|chr2 (86744202-86743986)
               

               
               912-1128, gnl|Mm7|chr6 (71526797-71527013)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               254-659, gnl|bosTau2|chr11 (35319323-35318932)
               

               
               254-659, gnl|canFam2|chr17 (41615105-41614852)
               

               
               254-659, gnl|danRer3|chr14 (14155673-14155414)
               

               
               254-659, gnl|echTel1|scaffold_206313 (3734-3956)
               

               
               254-659, gnl|galGal2|chr4 (85722923-85723167)
               

               
               254-659, gnl|hg17|chr2 (86761434-86761687)
               

               
               254-659, gnl|Hg17|chr2 (86761854-86761441)
               

               
               254-659, gnl|loxAfr1|scaffold_64738 (854-1105)
               

               
               254-659, gnl|mm7|chr6 (71512829-71512573)
               

               
               254-659, gnl|Mm7|chr6 (71512436-71512820)
               

               
               254-659, gnl|monDom2|scaffold_63 (890477-890728)
               

               
               254-659, gnl|oryCun1|scaffold_211666 (33549-33296)
               

               
               254-659, gnl|panTro1|chr12 (89644492-89644745)
               

               
               254-659, gnl|rheMac2|chr13 (87248500-87248753)
               

               
               254-659, gnl|rn3|chr4 (105006929-105006673)
               

               
               254-659, gnl|xenTro1|scaffold_149 (695342-695579)
               


               
               912-1128, gnl|bosTau2|chr11 (35298870-35298654)
               

               
               912-1128, gnl|Hg17|chr2 (86744202-86743986)
               

               
               912-1128, gnl|Mm7|chr6 (71526797-71527013)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               cte (0.29274)
               

               
               med (0.116252)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               med (0.116252)

	254-659, gnl\|bosTau2\|chr11 (35319323-35318932)
	254-659, gnl\|canFam2\|chr17 (41615105-41614852)
	254-659, gnl\|danRer3\|chr14 (14155673-14155414)
	254-659, gnl\|echTel1\|scaffold_206313 (3734-3956)
	254-659, gnl\|galGal2\|chr4 (85722923-85723167)
	254-659, gnl\|hg17\|chr2 (86761434-86761687)
	254-659, gnl\|Hg17\|chr2 (86761854-86761441)
	254-659, gnl\|loxAfr1\|scaffold_64738 (854-1105)
	254-659, gnl\|mm7\|chr6 (71512829-71512573)
	254-659, gnl\|Mm7\|chr6 (71512436-71512820)
	254-659, gnl\|monDom2\|scaffold_63 (890477-890728)
	254-659, gnl\|oryCun1\|scaffold_211666 (33549-33296)
	254-659, gnl\|panTro1\|chr12 (89644492-89644745)
	254-659, gnl\|rheMac2\|chr13 (87248500-87248753)
	254-659, gnl\|rn3\|chr4 (105006929-105006673)
	254-659, gnl\|xenTro1\|scaffold_149 (695342-695579)

	912-1128, gnl\|bosTau2\|chr11 (35298870-35298654)
	912-1128, gnl\|Hg17\|chr2 (86744202-86743986)
	912-1128, gnl\|Mm7\|chr6 (71526797-71527013)