Ss1.1-Mixc-0036l06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGGGGCTTGTGAATCTCTGGTTCCGGGAAGCGCGGGAAGGGAGAGGTGCAGTCATGTCA GGCTTCGACGACCCCGGCATTTTCTACAGCGACAGCTTCGGCGGGGACAACGCGGCGGAT GAGGGGCAGGCCCGCAAGTCGCAGCTGCAGAGGCGCTTCAAGGAGTTCCTGCGGCAGTAC CGCGTGGGCACCGACCGCACCGGCTTCACCTTCAAGTACAGGGATGAACTCAAGCGGCAT TATAACCTGGGGGAGTATTGGATCGAGGTGGAGATGGAGGACCTGGCCAGCTTCGACGAG GACCTGGCCGACTACCTGTACAAGCAGCCAGCTGAGCATTTGCAGCTGCTGGAGGAAGCT GCCAAGGAGGTGGCTGATGAGGTGACCCGGCCCCGGCCCACTGGCGATGAGGTGCTCCAG GACATCCAGGTCATGCTCAAGTCGGACGCCAGCCCGTCCAGCATCCGGAGCCTGAAGTCG GACACGATGTCGCACCTGGTGAAGATCCCGGGCATCGTCATCGCCGCCTCCGGGGTCCGC GCCAAGGCCACCCGCATCTCCATCCAGTGCCGCAGCTGCCGAAACACCCTCACCAACATC GCCATGCGCCCCGGCCTGGAGGGCTACGCCCTGCCCAGGAAGTGCAACACGGATCAGGCC GGGCGCCCCAAGTGCCCGCTGGACCCGTACTTCATCATGCCCGACAAGTGCAAGTGTGTG GACTTCCAGACCCTGAAGTTGCAGGAGCTGCCGGACGCGGTGCCTCACGGCGAGATGCCC AGACACATGCAGCTCTACTGCGACAGGTACCTGTGTGACAAGGTCGTCCCTGGAAACAGG GTCACCATCATGGGCATCTACTCCATCAAGAAGTTTGGCCTGACCTCCAACAGGGGCCGC GACAGGGTGGGCGTGGGCATCCGGAGCGCCTACATCCGGGTCCTGGGCATCCAGGTGGAC ACGGATGGCTCTGGCCGCAGCTTTGCCGGGGCCGTGACCCCGCAGGAGGAGGAGGAGTTC CGGCGGCTGGCCGCCCTCCCCAACGTCTACGAGGTCGTCTCCAAGAGCATCGCCCCCTCC ATCTTCGGGGGCACGGACATGAAGAAGGCCATCGCCTGCCTGCTCTTCGGGGGTTCCCGA AAGAGGCTCCCCGATGGCCTCACTCGCCGAGGAGACATCAACCTGCTGATGCTGGGGGAC CCGGGGACGGCCAAGTCCCAGTTGCTGAAGTTTGTGGAGAAGTGCTCTCCCATCGGGGTG TACACGTCTGGGAAGGGCAGCAGCGCGGCTGGCCTGACCGCCTCGGTGATGAGGGACCCC TCGTCCCGGAACTTCATCATGGAGGGCGGGGCCATGGTCCTGGCCGATGGCGGTGTCGTC TGTATCGATGAGTTTGACAAGATGCGCGAAGACGACCGTGTGGCGATCCACGAGGCCATG GAGCAGCAGACCATCTCCATTGCCAAGGCCGGCATCACCACCACCCTCAACTCGCGCTGC TCCGTCCTGGCCGCCGCCAACTCGGTGTTCGGCCGCTGGGATGAGACGAAGGGGGAGGAC AACATCGACTTCATGCCCACCATCCTGTCGCGCTTCGACATGATCTTCATCGTCAAGGAC GAGCACAACGAGGAGAGGGACGTGATGCTGGCCAAGCATGTCATCACTCTGCACGTGAGC GCACTGACGCAGACCCAGGCCGTGGAGGGCGAGATCGACCTGGCCAAGCTGAAGAAGTTC ATCGCCTACTGCCGCGCGAAGTGTGGTCCCCGGCTGTCGGCCGAGGCCGCAGAGAAGCTC AAGAACCGGTACATCATCATGCGGAGCGGGGCCCGTCAACACGAGAGGGACAGCGACCGC CGCTCCAGCATCCCCATCACCGTGCGGCAGCTGGAGGCCATCGTGCGCATTGCCGAGGCC CTCAGCAAGATGAAGCTGCAGCCCTTCGCCACGGAGGCGGACGTGGAGGAGGCCCTGAGG CTCTTCCAAGTGTCCACGCTGGACGCCGCCTTGTCGGGCACCCTGTCAGGGGTGGAGGGC TTCACCAGCCAGGAGGACCAGGAGTTGCTGAGCCGCATTGAGAAGCAGCTCAAGCGCCGC TTTGCCATCGGCTCCCAGGTGTCAGAGCACAGCATCATCCAGGACTTCACCAAGCAGAAG TACCCGGAGCACGCCATCCACAGGGTTCTGCAGCTCATGCTGCGGCGGGGCGAGCTCCAG CATCGCATGCAGCGCAAGGTCCTCTACCGCCTCAAGTGAGCTGCACCACCCGCCGCAGGA AACCACCTCTACCACCTCGAACCCTGTCCTGCACACTCTCGCTGCTAGGTGCCTCCCTCG GCTGCTGGTCCAAGAAACGTGCTTTTGAAGTCACTGAAGTAATAAAGCCATGATGTGTTT GGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGGGGCTTGTGAATCTCTGGTTCCGGGAAGCGCGGGAAGGGAGAGGTGCAGTCATGTCA GGCTTCGACGACCCCGGCATTTTCTACAGCGACAGCTTCGGCGGGGACAACGCGGCGGAT GAGGGGCAGGCCCGCAAGTCGCAGCTGCAGAGGCGCTTCAAGGAGTTCCTGCGGCAGTAC CGCGTGGGCACCGACCGCACCGGCTTCACCTTCAAGTACAGGGATGAACTCAAGCGGCAT TATAACCTGGGGGAGTATTGGATCGAGGTGGAGATGGAGGACCTGGCCAGCTTCGACGAG GACCTGGCCGACTACCTGTACAAGCAGCCAGCTGAGCATTTGCAGCTGCTGGAGGAAGCT GCCAAGGAGGTGGCTGATGAGGTGACCCGGCCCCGGCCCACTGGCGATGAGGTGCTCCAG GACATCCAGGTCATGCTCAAGTCGGACGCCAGCCCGTCCAGCATCCGGAGCCTGAAGTCG GACACGATGTCGCACCTGGTGAAGATCCCGGGCATCGTCATCGCCGCCTCCGGGGTCCGC GCCAAGGCCACCCGCATCTCCATCCAGTGCCGCAGCTGCCGAAACACCCTCACCAACATC GCCATGCGCCCCGGCCTGGAGGGCTACGCCCTGCCCAGGAAGTGCAACACGGATCAGGCC GGGCGCCCCAAGTGCCCGCTGGACCCGTACTTCATCATGCCCGACAAGTGCAAGTGTGTG GACTTCCAGACCCTGAAGTTGCAGGAGCTGCCGGACGCGGTGCCTCACGGCGAGATGCCC AGACACATGCAGCTCTACTGCGACAGGTACCTGTGTGACAAGGTCGTCCCTGGAAACAGG GTCACCATCATGGGCATCTACTCCATCAAGAAGTTTGGCCTGACCTCCAACAGGGGCCGC GACAGGGTGGGCGTGGGCATCCGGAGCGCCTACATCCGGGTCCTGGGCATCCAGGTGGAC ACGGATGGCTCTGGCCGCAGCTTTGCCGGGGCCGTGACCCCGCAGGAGGAGGAGGAGTTC CGGCGGCTGGCCGCCCTCCCCAACGTCTACGAGGTCGTCTCCAAGAGCATCGCCCCCTCC ATCTTCGGGGGCACGGACATGAAGAAGGCCATCGCCTGCCTGCTCTTCGGGGGTTCCCGA AAGAGGCTCCCCGATGGCCTCACTCGCCGAGGAGACATCAACCTGCTGATGCTGGGGGAC CCGGGGACGGCCAAGTCCCAGTTGCTGAAGTTTGTGGAGAAGTGCTCTCCCATCGGGGTG TACACGTCTGGGAAGGGCAGCAGCGCGGCTGGCCTGACCGCCTCGGTGATGAGGGACCCC TCGTCCCGGAACTTCATCATGGAGGGCGGGGCCATGGTCCTGGCCGATGGCGGTGTCGTC TGTATCGATGAGTTTGACAAGATGCGCGAAGACGACCGTGTGGCGATCCACGAGGCCATG GAGCAGCAGACCATCTCCATTGCCAAGGCCGGCATCACCACCACCCTCAACTCGCGCTGC TCCGTCCTGGCCGCCGCCAACTCGGTGTTCGGCCGCTGGGATGAGACGAAGGGGGAGGAC AACATCGACTTCATGCCCACCATCCTGTCGCGCTTCGACATGATCTTCATCGTCAAGGAC GAGCACAACGAGGAGAGGGACGTGATGCTGGCCAAGCATGTCATCACTCTGCACGTGAGC GCACTGACGCAGACCCAGGCCGTGGAGGGCGAGATCGACCTGGCCAAGCTGAAGAAGTTC ATCGCCTACTGCCGCGCGAAGTGTGGTCCCCGGCTGTCGGCCGAGGCCGCAGAGAAGCTC AAGAACCGGTACATCATCATGCGGAGCGGGGCCCGTCAACACGAGAGGGACAGCGACCGC CGCTCCAGCATCCCCATCACCGTGCGGCAGCTGGAGGCCATCGTGCGCATTGCCGAGGCC CTCAGCAAGATGAAGCTGCAGCCCTTCGCCACGGAGGCGGACGTGGAGGAGGCCCTGAGG CTCTTCCAAGTGTCCACGCTGGACGCCGCCTTGTCGGGCACCCTGTCAGGGGTGGAGGGC TTCACCAGCCAGGAGGACCAGGAGTTGCTGAGCCGCATTGAGAAGCAGCTCAAGCGCCGC TTTGCCATCGGCTCCCAGGTGTCAGAGCACAGCATCATCCAGGACTTCACCAAGCAGAAG TACCCGGAGCACGCCATCCACAGGGTTCTGCAGCTCATGCTGCGGCGGGGCGAGCTCCAG CATCGCATGCAGCGCAAGGTCCTCTACCGCCTCAAGTGAGCTGCACCACCCGCCGCAGGA AACCACCTCTACCACCTCGAACCCTGTCCTGCACACTCTCGCTGCTAGGTGCCTCCCTCG GCTGCTGGTCCAAGAAACGTGCTTTTGAAGTCACTGAAGTAATAAAGCCATGATGTGTTT GGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1364-1482, - strand, RNAz p=0.667435 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1364-1482, - strand, RNAz p=0.667435 |
| Aligned organism(s): 66 entry(ies) | More info |
| Aligned organism(s): 66 entry(ies) | Help | Less info |
| 45-222, gnl|bosTau2|chr5 (46450700-46450877) | |
| 45-222, gnl|Hg17|chr22 (34120976-34121153) | |
| 45-222, gnl|Mm7|chr8 (73651619-73651796) | |
| 473-682, gnl|bosTau2|chr5 (46455051-46455262) | |
| 473-682, gnl|canFam2|chr10 (31806939-31806756) | |
| 473-682, gnl|danRer3|chr20 (10426267-10426450) | |
| 473-682, gnl|dasNov1|scaffold_108754 (1000-1184) | |
| 473-682, gnl|fr1|chrUn (188586439-188586255) | |
| 473-682, gnl|galGal2|chr1 (48815347-48815165) | |
| 473-682, gnl|hg17|chr22 (34127095-34127279) | |
| 473-682, gnl|Hg17|chr22 (34127095-34127300) | |
| 473-682, gnl|mm7|chr8 (73654460-73654644) | |
| 473-682, gnl|Mm7|chr8 (73654460-73654664) | |
| 473-682, gnl|monDom2|scaffold_34 (2882666-2882483) | |
| 473-682, gnl|oryCun1|scaffold_145049 (11802-11986) | |
| 473-682, gnl|panTro1|chr23 (34284265-34284449) | |
| 473-682, gnl|rheMac2|chr10 (79320009-79320193) | |
| 473-682, gnl|rn3|chr19 (13988586-13988768) | |
| 473-682, gnl|tetNig1|chrUn_random (127603280-127603097) | |
| 473-682, gnl|xenTro1|scaffold_156 (443742-443924) | |
| 805-974, gnl|bosTau2|chr5 (46457840-46458009) | |
| 805-974, gnl|canFam2|chr10 (31803953-31803809) | |
| 805-974, gnl|danRer3|chr20 (10428636-10428785) | |
| 805-974, gnl|dasNov1|scaffold_33516 (1277-1423) | |
| 805-974, gnl|echTel1|scaffold_280239 (42119-41965) | |
| 805-974, gnl|fr1|chrUn (188584454-188584305) | |
| 805-974, gnl|galGal2|chr1 (48813466-48813322) | |
| 805-974, gnl|hg17|chr22 (34131286-34131432) | |
| 805-974, gnl|Hg17|chr22 (34131289-34131458) | |
| 805-974, gnl|loxAfr1|scaffold_16650 (3449-3573) | |
| 805-974, gnl|mm7|chr8 (73657768-73657914) | |
| 805-974, gnl|Mm7|chr8 (73657771-73657940) | |
| 805-974, gnl|monDom2|scaffold_34 (2881869-2881724) | |
| 805-974, gnl|oryCun1|scaffold_145049 (13879-14010) | |
| 805-974, gnl|panTro1|chr23 (34288747-34288893) | |
| 805-974, gnl|rheMac2|chr10 (79323860-79324006) | |
| 805-974, gnl|rn3|chr19 (13991795-13991941) | |
| 805-974, gnl|tetNig1|chrUn_random (127601873-127601724) | |
| 805-974, gnl|xenTro1|scaffold_156 (444754-444900) | |
| 1167-1482, gnl|bosTau2|chr14 (9832310-9831996) | |
| 1167-1482, gnl|Hg17|chr8 (49045689-49046004) | |
| 1167-1482, gnl|Mm7|chr16 (15169241-15168936) | |
| 1644-1758, gnl|bosTau2|chr5 (46462616-46462730) | |
| 1644-1758, gnl|canFam2|chr10 (31799337-31799199) | |
| 1644-1758, gnl|danRer3|chr20 (10431335-10431473) | |
| 1644-1758, gnl|dasNov1|scaffold_33516 (7449-7586) | |
| 1644-1758, gnl|echTel1|scaffold_280239 (38064-37925) | |
| 1644-1758, gnl|fr1|chrUn (188582972-188582851) | |
| 1644-1758, gnl|galGal2|chr1 (48810092-48809966) | |
| 1644-1758, gnl|hg17|chr22 (34138285-34138423) | |
| 1644-1758, gnl|Hg17|chr22 (34138290-34138404) | |
| 1644-1758, gnl|loxAfr1|scaffold_16650 (10070-10208) | |
| 1644-1758, gnl|mm7|chr8 (73664907-73665037) | |
| 1644-1758, gnl|Mm7|chr8 (73664912-73665026) | |
| 1644-1758, gnl|monDom2|scaffold_34 (2875751-2875626) | |
| 1644-1758, gnl|panTro1|chr23 (34295750-34295888) | |
| 1644-1758, gnl|rheMac2|chr10 (79331034-79331172) | |
| 1644-1758, gnl|rn3|chr19 (13999238-13999368) | |
| 1644-1758, gnl|tetNig1|chrUn_random (127599247-127599126) | |
| 1644-1758, gnl|xenTro1|scaffold_156 (447593-447729) | |
| 1886-2038, gnl|bosTau2|chr5 (46465526-46465678) | |
| 1886-2038, gnl|Hg17|chr22 (34141864-34142016) | |
| 1886-2038, gnl|Mm7|chr8 (73666721-73666873) | |
| 2154-2401, gnl|bosTau2|chr5 (46468605-46468870) | |
| 2154-2401, gnl|Hg17|chr22 (34144697-34145043) | |
| 2154-2401, gnl|Mm7|chr8 (73669140-73669411) |
| Aligned organism(s): 66 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 45-222, gnl|bosTau2|chr5 (46450700-46450877) | |
| 45-222, gnl|Hg17|chr22 (34120976-34121153) | |
| 45-222, gnl|Mm7|chr8 (73651619-73651796) | |
| 473-682, gnl|bosTau2|chr5 (46455051-46455262) | |
| 473-682, gnl|canFam2|chr10 (31806939-31806756) | |
| 473-682, gnl|danRer3|chr20 (10426267-10426450) | |
| 473-682, gnl|dasNov1|scaffold_108754 (1000-1184) | |
| 473-682, gnl|fr1|chrUn (188586439-188586255) | |
| 473-682, gnl|galGal2|chr1 (48815347-48815165) | |
| 473-682, gnl|hg17|chr22 (34127095-34127279) | |
| 473-682, gnl|Hg17|chr22 (34127095-34127300) | |
| 473-682, gnl|mm7|chr8 (73654460-73654644) | |
| 473-682, gnl|Mm7|chr8 (73654460-73654664) | |
| 473-682, gnl|monDom2|scaffold_34 (2882666-2882483) | |
| 473-682, gnl|oryCun1|scaffold_145049 (11802-11986) | |
| 473-682, gnl|panTro1|chr23 (34284265-34284449) | |
| 473-682, gnl|rheMac2|chr10 (79320009-79320193) | |
| 473-682, gnl|rn3|chr19 (13988586-13988768) | |
| 473-682, gnl|tetNig1|chrUn_random (127603280-127603097) | |
| 473-682, gnl|xenTro1|scaffold_156 (443742-443924) | |
| 805-974, gnl|bosTau2|chr5 (46457840-46458009) | |
| 805-974, gnl|canFam2|chr10 (31803953-31803809) | |
| 805-974, gnl|danRer3|chr20 (10428636-10428785) | |
| 805-974, gnl|dasNov1|scaffold_33516 (1277-1423) | |
| 805-974, gnl|echTel1|scaffold_280239 (42119-41965) | |
| 805-974, gnl|fr1|chrUn (188584454-188584305) | |
| 805-974, gnl|galGal2|chr1 (48813466-48813322) | |
| 805-974, gnl|hg17|chr22 (34131286-34131432) | |
| 805-974, gnl|Hg17|chr22 (34131289-34131458) | |
| 805-974, gnl|loxAfr1|scaffold_16650 (3449-3573) | |
| 805-974, gnl|mm7|chr8 (73657768-73657914) | |
| 805-974, gnl|Mm7|chr8 (73657771-73657940) | |
| 805-974, gnl|monDom2|scaffold_34 (2881869-2881724) | |
| 805-974, gnl|oryCun1|scaffold_145049 (13879-14010) | |
| 805-974, gnl|panTro1|chr23 (34288747-34288893) | |
| 805-974, gnl|rheMac2|chr10 (79323860-79324006) | |
| 805-974, gnl|rn3|chr19 (13991795-13991941) | |
| 805-974, gnl|tetNig1|chrUn_random (127601873-127601724) | |
| 805-974, gnl|xenTro1|scaffold_156 (444754-444900) | |
| 1167-1482, gnl|bosTau2|chr14 (9832310-9831996) | |
| 1167-1482, gnl|Hg17|chr8 (49045689-49046004) | |
| 1167-1482, gnl|Mm7|chr16 (15169241-15168936) | |
| 1644-1758, gnl|bosTau2|chr5 (46462616-46462730) | |
| 1644-1758, gnl|canFam2|chr10 (31799337-31799199) | |
| 1644-1758, gnl|danRer3|chr20 (10431335-10431473) | |
| 1644-1758, gnl|dasNov1|scaffold_33516 (7449-7586) | |
| 1644-1758, gnl|echTel1|scaffold_280239 (38064-37925) | |
| 1644-1758, gnl|fr1|chrUn (188582972-188582851) | |
| 1644-1758, gnl|galGal2|chr1 (48810092-48809966) | |
| 1644-1758, gnl|hg17|chr22 (34138285-34138423) | |
| 1644-1758, gnl|Hg17|chr22 (34138290-34138404) | |
| 1644-1758, gnl|loxAfr1|scaffold_16650 (10070-10208) | |
| 1644-1758, gnl|mm7|chr8 (73664907-73665037) | |
| 1644-1758, gnl|Mm7|chr8 (73664912-73665026) | |
| 1644-1758, gnl|monDom2|scaffold_34 (2875751-2875626) | |
| 1644-1758, gnl|panTro1|chr23 (34295750-34295888) | |
| 1644-1758, gnl|rheMac2|chr10 (79331034-79331172) | |
| 1644-1758, gnl|rn3|chr19 (13999238-13999368) | |
| 1644-1758, gnl|tetNig1|chrUn_random (127599247-127599126) | |
| 1644-1758, gnl|xenTro1|scaffold_156 (447593-447729) | |
| 1886-2038, gnl|bosTau2|chr5 (46465526-46465678) | |
| 1886-2038, gnl|Hg17|chr22 (34141864-34142016) | |
| 1886-2038, gnl|Mm7|chr8 (73666721-73666873) | |
| 2154-2401, gnl|bosTau2|chr5 (46468605-46468870) | |
| 2154-2401, gnl|Hg17|chr22 (34144697-34145043) | |
| 2154-2401, gnl|Mm7|chr8 (73669140-73669411) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| cag (0.453583) | |
| elu (0.385356) | |
| csp (0.322373) | |
| fce (0.271592) | |
| med (0.232504) | |
| mcp (0.170648) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| cly (0.120642) | |
| ecc (0.115035) | |
| cty (0.10408) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cag (0.453583) | |
| elu (0.385356) | |
| csp (0.322373) | |
| fce (0.271592) | |
| med (0.232504) | |
| mcp (0.170648) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| cly (0.120642) | |
| ecc (0.115035) | |
| cty (0.10408) |