Non-Coding RNA Search

Ss1.1-Mixc-0036m16.3

Sequence:


               
               TTTTTTTTTTTTTTTTTTAAATATATATTTGTTAAAGTTATACCTTCTTGTTTCTCTGGG
GAAATCTGCCTTAGCTCATTCCCAATAAATTAATACTCTTCAATAGCTTATATTCTGGGG
AGGGGGGTGCAGTGGGGCAGGGGGCCCGACCTCAGCCCCTTGTGCTGCGCCGGAGCGGCT
GGCAGAGGTCCCCAATGGGCAGTTCTGTGCTGGGCATAGGCCTGTGCTCTGCCTCAGATT
GGGAAGGGGAATACAGCAGCTGCCCCCCTCCCACTGCCTCCTCCCAGGGTGGGCCCAACC
TGGCCTCTTGGGCAGGGGTTTTGGGGGTGGCCCCTCCTCCACCCCCAGGGGGCAGAGCCT
GGTGGAGGGTGGGCAGGTGGCCCAGCAGTTATTGCACAGGGAGCAGCAGATAGGGATGGG
CACCCACGGGGCAGCAGCATCTGCCCAGAGCCCTTGGGTCCCCAGCCAGGCAGTCCTCCA
GGCTGGGCCCGGGGGCAGGAGTTGTGCTTGTGCAGGTGCCGGGCAGCACCGCCCGCACCT
GCCTCGTGCCCGCGGCCACCTGGCGGGCTGTCCCCTGCACCCCGCCCGCCACCCAGCCTG
CTCGCGCCGCGCCCAGCGGTGCCCATCCTGAGGTAAAGGTCAGTGTGCGGGCCGGAGCCC
AAGCGGCGCGGGCGGACCCCCGACATGGGCGGCCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTAAATATATATTTGTTAAAGTTATACCTTCTTGTTTCTCTGGG
GAAATCTGCCTTAGCTCATTCCCAATAAATTAATACTCTTCAATAGCTTATATTCTGGGG
AGGGGGGTGCAGTGGGGCAGGGGGCCCGACCTCAGCCCCTTGTGCTGCGCCGGAGCGGCT
GGCAGAGGTCCCCAATGGGCAGTTCTGTGCTGGGCATAGGCCTGTGCTCTGCCTCAGATT
GGGAAGGGGAATACAGCAGCTGCCCCCCTCCCACTGCCTCCTCCCAGGGTGGGCCCAACC
TGGCCTCTTGGGCAGGGGTTTTGGGGGTGGCCCCTCCTCCACCCCCAGGGGGCAGAGCCT
GGTGGAGGGTGGGCAGGTGGCCCAGCAGTTATTGCACAGGGAGCAGCAGATAGGGATGGG
CACCCACGGGGCAGCAGCATCTGCCCAGAGCCCTTGGGTCCCCAGCCAGGCAGTCCTCCA
GGCTGGGCCCGGGGGCAGGAGTTGTGCTTGTGCAGGTGCCGGGCAGCACCGCCCGCACCT
GCCTCGTGCCCGCGGCCACCTGGCGGGCTGTCCCCTGCACCCCGCCCGCCACCCAGCCTG
CTCGCGCCGCGCCCAGCGGTGCCCATCCTGAGGTAAAGGTCAGTGTGCGGGCCGGAGCCC
AAGCGGCGCGGGCGGACCCCCGACATGGGCGGCCGC

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               5-403, gnl|bosTau2|chr25 (5078743-5078344)
               

               
               5-403, gnl|Mm7|chr17 (22688637-22688252)
               


               
               428-585, gnl|bosTau2|chr25 (5078343-5078190)
               

               
               428-585, gnl|Mm7|chr17 (22688251-22688114)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-403, gnl|bosTau2|chr25 (5078743-5078344)
               

               
               5-403, gnl|Mm7|chr17 (22688637-22688252)
               


               
               428-585, gnl|bosTau2|chr25 (5078343-5078190)
               

               
               428-585, gnl|Mm7|chr17 (22688251-22688114)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ece (0.229305)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               ebs (0.118301)

	5-403, gnl\|bosTau2\|chr25 (5078743-5078344)
	5-403, gnl\|Mm7\|chr17 (22688637-22688252)

	428-585, gnl\|bosTau2\|chr25 (5078343-5078190)
	428-585, gnl\|Mm7\|chr17 (22688251-22688114)