Ss1.1-Mixc-0036m17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAATTAGGCTCATAGAAACCAAGAAACTGCTATCATGGTGGGGAAGCCCAAGCTTCACTA CTTCGATGGACGAGGCAGGGCAGAGGTTATCCGGTGGCTTCTGGCTTCAGCTGGAGTGGA GTTCGAAGAGAAATTTGTAGATACTCTAGAAGATTTGGAAAAGTTAAGAAATGATGGGAG TTTGATGTTCCAGCAAGTGCCAATGATTGAAATTGATGGCATGAAGTTGGTCCAGACCAG AGCCATTCTCAACTATATCGCTACCAAATATGATCTCTGTGGGAAAGACATAAAAGAGAG AGCTGCAGTTGATATGTACACAGAAGGTATAGCAGATATAGGTGAAATGATCATGCTTTT GCCAATATGCCCACCTGATGAAAAAGATGCTAAGATGGCCTTGATCAAAGAAAGAGTAAG CAACCGTTATCTTCCTGCATTTGAAAAAGTGTTGAAGAGCCATGGACAAGACTACCTTGT GGGCAACAAGCTGAGCAGGGCTGACATCCAGCTGGTTGAACTTCTCTACTACGTGGAAGA GCTGGACCCCAGCCTGCTGGCCAACTTCCCTCTGCTGAAGGCCCTGAAAACCAGAGTCAG CAACCTCCCCAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAATTAGGCTCATAGAAACCAAGAAACTGCTATCATGGTGGGGAAGCCCAAGCTTCACTA CTTCGATGGACGAGGCAGGGCAGAGGTTATCCGGTGGCTTCTGGCTTCAGCTGGAGTGGA GTTCGAAGAGAAATTTGTAGATACTCTAGAAGATTTGGAAAAGTTAAGAAATGATGGGAG TTTGATGTTCCAGCAAGTGCCAATGATTGAAATTGATGGCATGAAGTTGGTCCAGACCAG AGCCATTCTCAACTATATCGCTACCAAATATGATCTCTGTGGGAAAGACATAAAAGAGAG AGCTGCAGTTGATATGTACACAGAAGGTATAGCAGATATAGGTGAAATGATCATGCTTTT GCCAATATGCCCACCTGATGAAAAAGATGCTAAGATGGCCTTGATCAAAGAAAGAGTAAG CAACCGTTATCTTCCTGCATTTGAAAAAGTGTTGAAGAGCCATGGACAAGACTACCTTGT GGGCAACAAGCTGAGCAGGGCTGACATCCAGCTGGTTGAACTTCTCTACTACGTGGAAGA GCTGGACCCCAGCCTGCTGGCCAACTTCCCTCTGCTGAAGGCCCTGAAAACCAGAGTCAG CAACCTCCCCAC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 46 entry(ies) | More info |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
| 6-121, gnl|bosTau2|chr23 (22737210-22737325) | |
| 6-121, gnl|canFam2|chr12 (23358209-23358345) | |
| 6-121, gnl|dasNov1|scaffold_40613 (1025-883) | |
| 6-121, gnl|echTel1|scaffold_166587 (3738-3596) | |
| 6-121, gnl|galGal2|chr3 (86677876-86677739) | |
| 6-121, gnl|hg17|chr6 (52771920-52772064) | |
| 6-121, gnl|Hg17|chr6 (52878643-52878505) | |
| 6-121, gnl|loxAfr1|scaffold_20329 (2294-2437) | |
| 6-121, gnl|mm7|chr1 (21444543-21444411) | |
| 6-121, gnl|Mm7|chr1 (21444417-21444532) | |
| 6-121, gnl|oryCun1|scaffold_174004 (97934-97801) | |
| 6-121, gnl|panTro1|chr5 (53784253-53784397) | |
| 6-121, gnl|rheMac2|chr4 (52440176-52440312) | |
| 6-121, gnl|rn3|chr9 (20015807-20015667) | |
| 6-121, gnl|tetNig1|chr17 (4503271-4503164) | |
| 169-303, gnl|bosTau2|chr23 (22744580-22744714) | |
| 169-303, gnl|canFam2|chr12 (23371175-23371331) | |
| 169-303, gnl|danRer3|chr13 (982004-981866) | |
| 169-303, gnl|dasNov1|scaffold_40613 (5455-5295) | |
| 169-303, gnl|echTel1|scaffold_214137 (1477-1317) | |
| 169-303, gnl|fr1|chrUn (145712570-145712707) | |
| 169-303, gnl|galGal2|chr3 (86681818-86681657) | |
| 169-303, gnl|hg17|chr6 (52768914-52769074) | |
| 169-303, gnl|Hg17|chr6 (52875240-52875106) | |
| 169-303, gnl|loxAfr1|scaffold_20329 (20721-20881) | |
| 169-303, gnl|mm7|chr1 (21453671-21453521) | |
| 169-303, gnl|Mm7|chr9 (78412031-78411898) | |
| 169-303, gnl|oryCun1|scaffold_174004 (45631-45471) | |
| 169-303, gnl|panTro1|chr5 (53781300-53781460) | |
| 169-303, gnl|rheMac2|chr4 (52437543-52437703) | |
| 169-303, gnl|rn3|chr9 (20023089-20022939) | |
| 169-303, gnl|tetNig1|chr17 (4503740-4503601) | |
| 434-581, gnl|bosTau2|chr23 (22770313-22770459) | |
| 434-581, gnl|canFam2|chr12 (23351135-23351333) | |
| 434-581, gnl|dasNov1|scaffold_40613 (12739-12558) | |
| 434-581, gnl|echTel1|scaffold_214209 (3743-3918) | |
| 434-581, gnl|galGal2|chr3 (86713435-86713242) | |
| 434-581, gnl|hg17|chr6 (52739014-52739212) | |
| 434-581, gnl|Hg17|chr6 (52805762-52805615) | |
| 434-581, gnl|loxAfr1|scaffold_20329 (16261-16462) | |
| 434-581, gnl|mm7|chr1 (21381585-21381391) | |
| 434-581, gnl|Mm7|chr9 (78406567-78406420) | |
| 434-581, gnl|oryCun1|scaffold_174004 (86885-86687) | |
| 434-581, gnl|panTro1|chr5 (53757120-53757320) | |
| 434-581, gnl|rheMac2|chr4 (52413515-52413713) | |
| 434-581, gnl|rn3|chr9 (20026917-20026716) |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 6-121, gnl|bosTau2|chr23 (22737210-22737325) | |
| 6-121, gnl|canFam2|chr12 (23358209-23358345) | |
| 6-121, gnl|dasNov1|scaffold_40613 (1025-883) | |
| 6-121, gnl|echTel1|scaffold_166587 (3738-3596) | |
| 6-121, gnl|galGal2|chr3 (86677876-86677739) | |
| 6-121, gnl|hg17|chr6 (52771920-52772064) | |
| 6-121, gnl|Hg17|chr6 (52878643-52878505) | |
| 6-121, gnl|loxAfr1|scaffold_20329 (2294-2437) | |
| 6-121, gnl|mm7|chr1 (21444543-21444411) | |
| 6-121, gnl|Mm7|chr1 (21444417-21444532) | |
| 6-121, gnl|oryCun1|scaffold_174004 (97934-97801) | |
| 6-121, gnl|panTro1|chr5 (53784253-53784397) | |
| 6-121, gnl|rheMac2|chr4 (52440176-52440312) | |
| 6-121, gnl|rn3|chr9 (20015807-20015667) | |
| 6-121, gnl|tetNig1|chr17 (4503271-4503164) | |
| 169-303, gnl|bosTau2|chr23 (22744580-22744714) | |
| 169-303, gnl|canFam2|chr12 (23371175-23371331) | |
| 169-303, gnl|danRer3|chr13 (982004-981866) | |
| 169-303, gnl|dasNov1|scaffold_40613 (5455-5295) | |
| 169-303, gnl|echTel1|scaffold_214137 (1477-1317) | |
| 169-303, gnl|fr1|chrUn (145712570-145712707) | |
| 169-303, gnl|galGal2|chr3 (86681818-86681657) | |
| 169-303, gnl|hg17|chr6 (52768914-52769074) | |
| 169-303, gnl|Hg17|chr6 (52875240-52875106) | |
| 169-303, gnl|loxAfr1|scaffold_20329 (20721-20881) | |
| 169-303, gnl|mm7|chr1 (21453671-21453521) | |
| 169-303, gnl|Mm7|chr9 (78412031-78411898) | |
| 169-303, gnl|oryCun1|scaffold_174004 (45631-45471) | |
| 169-303, gnl|panTro1|chr5 (53781300-53781460) | |
| 169-303, gnl|rheMac2|chr4 (52437543-52437703) | |
| 169-303, gnl|rn3|chr9 (20023089-20022939) | |
| 169-303, gnl|tetNig1|chr17 (4503740-4503601) | |
| 434-581, gnl|bosTau2|chr23 (22770313-22770459) | |
| 434-581, gnl|canFam2|chr12 (23351135-23351333) | |
| 434-581, gnl|dasNov1|scaffold_40613 (12739-12558) | |
| 434-581, gnl|echTel1|scaffold_214209 (3743-3918) | |
| 434-581, gnl|galGal2|chr3 (86713435-86713242) | |
| 434-581, gnl|hg17|chr6 (52739014-52739212) | |
| 434-581, gnl|Hg17|chr6 (52805762-52805615) | |
| 434-581, gnl|loxAfr1|scaffold_20329 (16261-16462) | |
| 434-581, gnl|mm7|chr1 (21381585-21381391) | |
| 434-581, gnl|Mm7|chr9 (78406567-78406420) | |
| 434-581, gnl|oryCun1|scaffold_174004 (86885-86687) | |
| 434-581, gnl|panTro1|chr5 (53757120-53757320) | |
| 434-581, gnl|rheMac2|chr4 (52413515-52413713) | |
| 434-581, gnl|rn3|chr9 (20026917-20026716) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| cov (0.396458) | |
| tes (0.207814) | |
| sin (0.174948) | |
| ski (0.146735) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.396458) | |
| tes (0.207814) | |
| sin (0.174948) | |
| ski (0.146735) |