Non-Coding RNA Search

Ss1.1-Mixc-0036m18.3

Sequence:


               
               CTACCAGTTTGATCTGCTGTTGCTCTTAGAAGGCCCAGAAAGCCACTGGGCATTGCCAAG
GAGTCCCGGATCATATGGAAAACCCTCACTTTTTCTTCAGGACTGTATCAAAAAATTCTT
TGATGGATGTTGCCGTGGACCAGCAATACCCACACGTGCTGCCAGCAGGATCTCTGTTTG
TTCCTAGGAACACAGCAAGGAGAGCCCAGGCAGAAGCAGGAAGCCTAGAACCCCCTTGGC
TAAGATGCTGCTCCTGCTCTGTCTCTAGAACCTTCTTGCAAGTAGAGACGGAACCAGCCC
AATACAAAGTGCAGAGCCAGCCTACAAATCTTGTAAAGTTCACTCCTCAATCTTTGGTGC
AACCATATTTGTATTCTTTCTTGGTATTTCTCCTCTCCCAATTTTAAGTAACCATTTTGC
CTTGGAATCATGATTAGAACATTTTCCTTTGCAGATGCCTTCCTCGGGGATGGTCCTCTC
CACCCTAAAGGGTCACCTGCAGGCCTGGCTGTTCAGGCCTCTCTGCTGTGGTGCTCTCTC
ATGAGAGACTCTCTGAATTTTAGCACAAAGTGCCTTTTCTTTCACAGCTGTCACCGCCTT
TAGAGGACTTTTGCTGCATCAGAAAAATGTGGAGGCTCCATATTAATGCATTATTACTTT
TAAAATTTTTGATAATTCTTAAAGCATCATTTGCACCTGTGTGGTAACTTTGCCTGTTGC
AGAGTGTCATGGCCAAGCTACAACTGGGAAACTGCTTTCTGCCAGTCTTGAGGTTGGTAA
TATTTGCTCTGAAAGAAAAGTATGTCCTAGCTTCGCCATTCAGGAAGAAAAAATGGAATA
TCAAAGTTATAGTAGTAAGTGAAACTGCTTTGGGTTTTAATGTTTTAGAGGAAGAAAAAA
GAATATTACGGAAATAGTGACTCTGGATGAGGGTAATGTGTTTGCCCCTTATTTCATTCA
TGGTTTGCTAGTGAAAAGGAAGTGAGGTTCTCTTGTGTAACTTTGTAGTTTCTTTGAATT
ACCAAATAGTTGGGCTCTTGACCCCCATGTGTTTTGCAAGAGTGTGTGGTAAGCATGGGT
GAAGAGAAGCAACAGGAGGGTGATAGTCTGTGTGTTGGGAAGTGGCAGGGGGTAATTTGT
TTTAGGGGAAAATGCCCACATTTTAACTTTTAAACTTCTGAATAAACTGCGTGAAAACAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTACCAGTTTGATCTGCTGTTGCTCTTAGAAGGCCCAGAAAGCCACTGGGCATTGCCAAG
GAGTCCCGGATCATATGGAAAACCCTCACTTTTTCTTCAGGACTGTATCAAAAAATTCTT
TGATGGATGTTGCCGTGGACCAGCAATACCCACACGTGCTGCCAGCAGGATCTCTGTTTG
TTCCTAGGAACACAGCAAGGAGAGCCCAGGCAGAAGCAGGAAGCCTAGAACCCCCTTGGC
TAAGATGCTGCTCCTGCTCTGTCTCTAGAACCTTCTTGCAAGTAGAGACGGAACCAGCCC
AATACAAAGTGCAGAGCCAGCCTACAAATCTTGTAAAGTTCACTCCTCAATCTTTGGTGC
AACCATATTTGTATTCTTTCTTGGTATTTCTCCTCTCCCAATTTTAAGTAACCATTTTGC
CTTGGAATCATGATTAGAACATTTTCCTTTGCAGATGCCTTCCTCGGGGATGGTCCTCTC
CACCCTAAAGGGTCACCTGCAGGCCTGGCTGTTCAGGCCTCTCTGCTGTGGTGCTCTCTC
ATGAGAGACTCTCTGAATTTTAGCACAAAGTGCCTTTTCTTTCACAGCTGTCACCGCCTT
TAGAGGACTTTTGCTGCATCAGAAAAATGTGGAGGCTCCATATTAATGCATTATTACTTT
TAAAATTTTTGATAATTCTTAAAGCATCATTTGCACCTGTGTGGTAACTTTGCCTGTTGC
AGAGTGTCATGGCCAAGCTACAACTGGGAAACTGCTTTCTGCCAGTCTTGAGGTTGGTAA
TATTTGCTCTGAAAGAAAAGTATGTCCTAGCTTCGCCATTCAGGAAGAAAAAATGGAATA
TCAAAGTTATAGTAGTAAGTGAAACTGCTTTGGGTTTTAATGTTTTAGAGGAAGAAAAAA
GAATATTACGGAAATAGTGACTCTGGATGAGGGTAATGTGTTTGCCCCTTATTTCATTCA
TGGTTTGCTAGTGAAAAGGAAGTGAGGTTCTCTTGTGTAACTTTGTAGTTTCTTTGAATT
ACCAAATAGTTGGGCTCTTGACCCCCATGTGTTTTGCAAGAGTGTGTGGTAAGCATGGGT
GAAGAGAAGCAACAGGAGGGTGATAGTCTGTGTGTTGGGAAGTGGCAGGGGGTAATTTGT
TTTAGGGGAAAATGCCCACATTTTAACTTTTAAACTTCTGAATAAACTGCGTGAAAACAG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               123-276, - strand, RNAz p=0.978515
               

               
               395-590, - strand, RNAz p=0.944531

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               123-276, - strand, RNAz p=0.978515
               

               
               395-590, - strand, RNAz p=0.944531

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-1199, gnl|bosTau2|chr14 (18227398-18226222)
               

               
               4-1199, gnl|Hg17|chr6 (36570847-36569647)
               

               
               4-1199, gnl|Mm7|chr17 (27158986-27157993)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-1199, gnl|bosTau2|chr14 (18227398-18226222)
               

               
               4-1199, gnl|Hg17|chr6 (36570847-36569647)
               

               
               4-1199, gnl|Mm7|chr17 (27158986-27157993)

Expressed library(ies): 18 entry(ies)

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Expressed library(ies): 18 entry(ies)

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               vin (0.332557)
               

               
               cte (0.29274)
               

               
               spl (0.286369)
               

               
               cbe (0.239234)
               

               
               med (0.232504)
               

               
               nbm (0.198649)
               

               
               fcc (0.197785)
               

               
               eye (0.170503)
               

               
               fat (0.147427)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               cte (0.29274)
               

               
               spl (0.286369)
               

               
               cbe (0.239234)
               

               
               med (0.232504)
               

               
               nbm (0.198649)
               

               
               fcc (0.197785)
               

               
               eye (0.170503)
               

               
               fat (0.147427)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

	123-276, - strand, RNAz p=0.978515
	395-590, - strand, RNAz p=0.944531

	4-1199, gnl\|bosTau2\|chr14 (18227398-18226222)
	4-1199, gnl\|Hg17\|chr6 (36570847-36569647)
	4-1199, gnl\|Mm7\|chr17 (27158986-27157993)

	vin (0.332557)
	cte (0.29274)
	spl (0.286369)
	cbe (0.239234)
	med (0.232504)
	nbm (0.198649)
	fcc (0.197785)
	eye (0.170503)
	fat (0.147427)
	csk (0.140746)
	nca (0.136874)
	pla (0.133672)
	lyg (0.133103)
	sug (0.127291)
	thg (0.126791)
	bla (0.124347)
	jca (0.11396)
	ldo (0.0970026)