Non-Coding RNA Search

Ss1.1-Mixc-0036o08.3

Sequence:


               
               TCGCCTTTATCGAGGGCCAAGGTCCTGGGTGCTGGCGCTGAGGGTCCGGGAAGCCTCACT
TAGGTGCCGGCTGGAGAACGGGAGCCCAGTGGCCCTTGGCCCATCCACGTTCAGCACGTT
GAGGGACACGGCTCTCTTCATCCCCGCTGCCCCTGCCGCCGCCTCCCCTCGGAGCCGGGA
GACCAGCTTCTCGCTTCCCCGCCGGATGGACTCCCGGAGCTTGGAGAAGGAGCTGCTCCG
CCGAAGCCTCTGCTGTTCTGCACCCCCGGCTGTGCCTGTTTTCAGGGCTCCGAGGGGCGC
GGGCAGGTCCTCCCTGCGGAGGATTTCTTTGTACAGCTCTTCCGCCTGCTGGTACTTGTT
CTGCTTCAGGTAGGCTGAGGCCAGGTTGTTCTTGGTCTTGGCCACGTTGGGGTCGTGGGG
CCCCCCCAGGGCCTCGTAAATGCTCAGGGCCCGGGCGTAGTGCCGCTCCACCTCCTCGAA
CTTGCCCTGGTTCTGGCAGAGCAGGGCCAGGTTGTTGAGCTGCTTGGCCACATCTGGGTG
GTCGGCGCCCAGGACCTTCTCACGGATCTCCAGGGCGCGCTGGCACAGGGGCTCCGCCTC
CCGGTAACGCCCCCGCTTCCCGTAGAGGACGGCCAGGTTGTTGAGGGTGGCGGCCACCGC
CGGGTGCTCAGGGCCCAGGGTCTGCTCCCGGATCTGCAGGGCATCGTGGAGCAGGTCTGT
GGCCTCTTTGTACTTGTTCTGGTCCCGGTACACTAGCGCCAGGATGTTGAGCATGGTGGC
CACGTCAGGGTGGCAGTGGCCTGAGCTCCGTTCGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGCCTTTATCGAGGGCCAAGGTCCTGGGTGCTGGCGCTGAGGGTCCGGGAAGCCTCACT
TAGGTGCCGGCTGGAGAACGGGAGCCCAGTGGCCCTTGGCCCATCCACGTTCAGCACGTT
GAGGGACACGGCTCTCTTCATCCCCGCTGCCCCTGCCGCCGCCTCCCCTCGGAGCCGGGA
GACCAGCTTCTCGCTTCCCCGCCGGATGGACTCCCGGAGCTTGGAGAAGGAGCTGCTCCG
CCGAAGCCTCTGCTGTTCTGCACCCCCGGCTGTGCCTGTTTTCAGGGCTCCGAGGGGCGC
GGGCAGGTCCTCCCTGCGGAGGATTTCTTTGTACAGCTCTTCCGCCTGCTGGTACTTGTT
CTGCTTCAGGTAGGCTGAGGCCAGGTTGTTCTTGGTCTTGGCCACGTTGGGGTCGTGGGG
CCCCCCCAGGGCCTCGTAAATGCTCAGGGCCCGGGCGTAGTGCCGCTCCACCTCCTCGAA
CTTGCCCTGGTTCTGGCAGAGCAGGGCCAGGTTGTTGAGCTGCTTGGCCACATCTGGGTG
GTCGGCGCCCAGGACCTTCTCACGGATCTCCAGGGCGCGCTGGCACAGGGGCTCCGCCTC
CCGGTAACGCCCCCGCTTCCCGTAGAGGACGGCCAGGTTGTTGAGGGTGGCGGCCACCGC
CGGGTGCTCAGGGCCCAGGGTCTGCTCCCGGATCTGCAGGGCATCGTGGAGCAGGTCTGT
GGCCTCTTTGTACTTGTTCTGGTCCCGGTACACTAGCGCCAGGATGTTGAGCATGGTGGC
CACGTCAGGGTGGCAGTGGCCTGAGCTCCGTTCGAG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|51260645|gb|AAH78736.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|51260645|gb|AAH78736.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               113-252, gnl|bosTau2|chr18 (38517718-38517855)
               

               
               113-252, gnl|Hg17|chr19 (50545924-50545736)
               

               
               113-252, gnl|Mm7|chr7 (17077423-17077544)
               


               
               381-557, gnl|bosTau2|chr18 (38518733-38518909)
               

               
               381-557, gnl|Hg17|chr19 (50544701-50544525)
               

               
               381-557, gnl|Mm7|chr7 (17078173-17078349)
               


               
               655-763, gnl|bosTau2|chr18 (38519346-38519454)
               

               
               655-763, gnl|Hg17|chr19 (50543834-50543725)
               

               
               655-763, gnl|Mm7|chr7 (17078878-17078979)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               113-252, gnl|bosTau2|chr18 (38517718-38517855)
               

               
               113-252, gnl|Hg17|chr19 (50545924-50545736)
               

               
               113-252, gnl|Mm7|chr7 (17077423-17077544)
               


               
               381-557, gnl|bosTau2|chr18 (38518733-38518909)
               

               
               381-557, gnl|Hg17|chr19 (50544701-50544525)
               

               
               381-557, gnl|Mm7|chr7 (17078173-17078349)
               


               
               655-763, gnl|bosTau2|chr18 (38519346-38519454)
               

               
               655-763, gnl|Hg17|chr19 (50543834-50543725)
               

               
               655-763, gnl|Mm7|chr7 (17078878-17078979)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               nep (0.183925)
               

               
               ton (0.1755)
               

               
               pla (0.133672)
               

               
               eep (0.122564)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               pla (0.133672)
               

               
               eep (0.122564)

	113-252, gnl\|bosTau2\|chr18 (38517718-38517855)
	113-252, gnl\|Hg17\|chr19 (50545924-50545736)
	113-252, gnl\|Mm7\|chr7 (17077423-17077544)

	381-557, gnl\|bosTau2\|chr18 (38518733-38518909)
	381-557, gnl\|Hg17\|chr19 (50544701-50544525)
	381-557, gnl\|Mm7\|chr7 (17078173-17078349)

	655-763, gnl\|bosTau2\|chr18 (38519346-38519454)
	655-763, gnl\|Hg17\|chr19 (50543834-50543725)
	655-763, gnl\|Mm7\|chr7 (17078878-17078979)