Non-Coding RNA Search

Ss1.1-Mixc-0036o21.5

Sequence:


               
               GGTCGTGATGGCGGCCCCGGAGCCGGAAGTGCAGTCCCCGGTCGCAGTCTCTGGTTTGGA
GTGGTGTGAGAAGTCGGAGGAAACCCACGACCCCCAGATAGAACTACTTGAGACTACTTC
TGCCCAAGAACCTCCCAACCCTTCGGAGCCCCTTCGTCCCAGAGACTGCATGGTGCCAGT
GGTGTTTCCTGGGCCTGTGAGCCAGGAAGGCTGCTGTCGGTTTACTTGTGAACTTCTAAA
GCATATCATGTACCAACGCCAGCAACTCCCTCTGCCCTATGAACAGCTTAAGCACTTCTA
CCGAAAACCTTCTCCCCAGGCAGAGGACATGGTGAAGAAGAAGCCTCGGGCCACTGCTGA
GGCAAGCAACAGGAAATGCCAACACATCCCCCGAGGCGCCCTCTTTAAGACCCCCTTTGG
ACCCATCCATGTCAATCGGACCTTTGAAGGACTGTCCTTATCTGAAGCCAAGAAGCTCAG
TTCCTACTTCCACTTCCGGGAGCCTGTTGAGCTGAAGAACAAGACCTTGCTTGAGAAGGC
CGACCTGGACCCTTCCCTAGACTTCATGGACTCCTTGGAGCATGACATTCCCAAAGGGTC
CTGGAGCATCCAGACGGAGCGGGGCAACGCCCTGGTGGTGCTGCGCAGCTTGCTCTGGCC
AGGCCTCACCTTCTACCATGCTCCCCGCACTAAGAACTGCGGCTACATCTACGTGGGCAC
CGGCGAGAAGAACATGGACCTGCCCTTCATGCTGTAGGGGGGCCACCCCCGGGAGTGAGA
ATGTAGAGCCTCGTTCCAGGCACCAGTGACATTGAAGGGCTTCCACGAGTGAAAGGGAAC
GCTTCTTAATGGTCAACACAGTGGCTAAATTATCTTTTCCCCACAGCACCAAGTCAGCCC
ATCCCTTGCTTGAAGCTGGTTCCTTCCTGGTGAGAGGAGGGTTCTATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTCGTGATGGCGGCCCCGGAGCCGGAAGTGCAGTCCCCGGTCGCAGTCTCTGGTTTGGA
GTGGTGTGAGAAGTCGGAGGAAACCCACGACCCCCAGATAGAACTACTTGAGACTACTTC
TGCCCAAGAACCTCCCAACCCTTCGGAGCCCCTTCGTCCCAGAGACTGCATGGTGCCAGT
GGTGTTTCCTGGGCCTGTGAGCCAGGAAGGCTGCTGTCGGTTTACTTGTGAACTTCTAAA
GCATATCATGTACCAACGCCAGCAACTCCCTCTGCCCTATGAACAGCTTAAGCACTTCTA
CCGAAAACCTTCTCCCCAGGCAGAGGACATGGTGAAGAAGAAGCCTCGGGCCACTGCTGA
GGCAAGCAACAGGAAATGCCAACACATCCCCCGAGGCGCCCTCTTTAAGACCCCCTTTGG
ACCCATCCATGTCAATCGGACCTTTGAAGGACTGTCCTTATCTGAAGCCAAGAAGCTCAG
TTCCTACTTCCACTTCCGGGAGCCTGTTGAGCTGAAGAACAAGACCTTGCTTGAGAAGGC
CGACCTGGACCCTTCCCTAGACTTCATGGACTCCTTGGAGCATGACATTCCCAAAGGGTC
CTGGAGCATCCAGACGGAGCGGGGCAACGCCCTGGTGGTGCTGCGCAGCTTGCTCTGGCC
AGGCCTCACCTTCTACCATGCTCCCCGCACTAAGAACTGCGGCTACATCTACGTGGGCAC
CGGCGAGAAGAACATGGACCTGCCCTTCATGCTGTAGGGGGGCCACCCCCGGGAGTGAGA
ATGTAGAGCCTCGTTCCAGGCACCAGTGACATTGAAGGGCTTCCACGAGTGAAAGGGAAC
GCTTCTTAATGGTCAACACAGTGGCTAAATTATCTTTTCCCCACAGCACCAAGTCAGCCC
ATCCCTTGCTTGAAGCTGGTTCCTTCCTGGTGAGAGGAGGGTTCTATC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61840537|ref|XP_601623.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61840537|ref|XP_601623.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               55-323, gnl|bosTau2|chr23 (16109138-16109406)
               

               
               55-323, gnl|Hg17|chr6 (43712097-43712365)
               

               
               55-323, gnl|Mm7|chr17 (44282444-44282179)
               


               
               590-773, gnl|bosTau2|chr23 (16127784-16127967)
               

               
               590-773, gnl|Hg17|chr6 (43746502-43746683)
               

               
               590-773, gnl|Mm7|chr17 (44258909-44258728)
               


               
               793-948, gnl|bosTau2|chr23 (16112071-16112218)
               

               
               793-948, gnl|Hg17|chr6 (43716209-43716366)
               

               
               793-948, gnl|Mm7|chr17 (44277215-44277092)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               55-323, gnl|bosTau2|chr23 (16109138-16109406)
               

               
               55-323, gnl|Hg17|chr6 (43712097-43712365)
               

               
               55-323, gnl|Mm7|chr17 (44282444-44282179)
               


               
               590-773, gnl|bosTau2|chr23 (16127784-16127967)
               

               
               590-773, gnl|Hg17|chr6 (43746502-43746683)
               

               
               590-773, gnl|Mm7|chr17 (44258909-44258728)
               


               
               793-948, gnl|bosTau2|chr23 (16112071-16112218)
               

               
               793-948, gnl|Hg17|chr6 (43716209-43716366)
               

               
               793-948, gnl|Mm7|chr17 (44277215-44277092)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               tes (0.207814)
               

               
               fbs (0.175346)
               

               
               cli (0.152812)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               fbs (0.175346)
               

               
               cli (0.152812)

	55-323, gnl\|bosTau2\|chr23 (16109138-16109406)
	55-323, gnl\|Hg17\|chr6 (43712097-43712365)
	55-323, gnl\|Mm7\|chr17 (44282444-44282179)

	590-773, gnl\|bosTau2\|chr23 (16127784-16127967)
	590-773, gnl\|Hg17\|chr6 (43746502-43746683)
	590-773, gnl\|Mm7\|chr17 (44258909-44258728)

	793-948, gnl\|bosTau2\|chr23 (16112071-16112218)
	793-948, gnl\|Hg17\|chr6 (43716209-43716366)
	793-948, gnl\|Mm7\|chr17 (44277215-44277092)