Non-Coding RNA Search

Ss1.1-Mixc-0037,b13.5

Sequence:


               
               AAGTGCTCCATGCCCAGATCCTGGAGAAGGACGCGGTGATCAAGGTCCTTCAGCAGCGTT
CCAGGAAAGACCCTGGCAAGGCCACCCAGGGCTCCCTGAGGCCCGCCAAGTCTGTGCCAT
CTATCTTTGTGGCTGCAGCTGCAGGGACCCAGGGCTGGCAAGGGCTCTCCTCTGGCGAAC
GGCAGATGGATGCTTCTGTCCAGCTGACTGCAGCAGACAGAGCAGAGGAGCCCATGGCCA
CAGCTCCCCTCGCTGCCCATGCCAAACACGGGAGCAGAGATGGGAGCACTCAGACCGATA
GCCCCCCGGACAGCACTGCCCCCTGCCTGGGCCTGGAGCCTGACAGCCTTCTGGGGTGCA
GCAGTGGCCAGAGGACCGCCTCGATGGATTCTGTTGCCACATCCAGAGTCCAGGATTTGT
CGGACATGGTGGAAATTCTGATCTGAAGGAGGCGGTGCCTCGGAGACGCTGAACCATTCC
CTGCTCGCCTCTGCCTCTGCCACGCCCCCATTCCAGCAGCCCCCCTGCCTGCCGTGGTCC
CCGCCCCTCTCCGAGCCAGGCACTCATTCCCGCTGACCATCTGGTCCCAGGAGTTGGGGA
AGGATGCTGCAGGGGCGAGGGGAGCTGTGAGCACTGTCCCCTGCCCCACAGAAAACTCTG
CCCCTTAGCCCCACACTCCTCCTGGACCCCTGCAGGATGAGGACTTGACCGCTACTGCCG
CCCAAGGCTTGCTGCCAGGGTAGCAACTGAAAGCTCAGAAGGGAGCTGGCCCCTTCTGCA
CCCCTCACTGGGCATGCGGGCAGGGAGGGAGGGTATATGCTGATTTGGGGGGCTCATTTC
CAAGGATGGCTGCCTGTGGACACCAGGTGGGCTGGTCTAATTGTCAAGCCTGGCTCAGTG
CTGTCCCTCCAACCTCATCTGCTCCTCAGCGCCTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGTGCTCCATGCCCAGATCCTGGAGAAGGACGCGGTGATCAAGGTCCTTCAGCAGCGTT
CCAGGAAAGACCCTGGCAAGGCCACCCAGGGCTCCCTGAGGCCCGCCAAGTCTGTGCCAT
CTATCTTTGTGGCTGCAGCTGCAGGGACCCAGGGCTGGCAAGGGCTCTCCTCTGGCGAAC
GGCAGATGGATGCTTCTGTCCAGCTGACTGCAGCAGACAGAGCAGAGGAGCCCATGGCCA
CAGCTCCCCTCGCTGCCCATGCCAAACACGGGAGCAGAGATGGGAGCACTCAGACCGATA
GCCCCCCGGACAGCACTGCCCCCTGCCTGGGCCTGGAGCCTGACAGCCTTCTGGGGTGCA
GCAGTGGCCAGAGGACCGCCTCGATGGATTCTGTTGCCACATCCAGAGTCCAGGATTTGT
CGGACATGGTGGAAATTCTGATCTGAAGGAGGCGGTGCCTCGGAGACGCTGAACCATTCC
CTGCTCGCCTCTGCCTCTGCCACGCCCCCATTCCAGCAGCCCCCCTGCCTGCCGTGGTCC
CCGCCCCTCTCCGAGCCAGGCACTCATTCCCGCTGACCATCTGGTCCCAGGAGTTGGGGA
AGGATGCTGCAGGGGCGAGGGGAGCTGTGAGCACTGTCCCCTGCCCCACAGAAAACTCTG
CCCCTTAGCCCCACACTCCTCCTGGACCCCTGCAGGATGAGGACTTGACCGCTACTGCCG
CCCAAGGCTTGCTGCCAGGGTAGCAACTGAAAGCTCAGAAGGGAGCTGGCCCCTTCTGCA
CCCCTCACTGGGCATGCGGGCAGGGAGGGAGGGTATATGCTGATTTGGGGGGCTCATTTC
CAAGGATGGCTGCCTGTGGACACCAGGTGGGCTGGTCTAATTGTCAAGCCTGGCTCAGTG
CTGTCCCTCCAACCTCATCTGCTCCTCAGCGCCTCA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|10436061|dbj|BAB14738.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|10436061|dbj|BAB14738.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               225-325, - strand, RNAz p=0.996799

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               225-325, - strand, RNAz p=0.996799

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

Help | Less info


               
               3-220, gnl|bosTau2|chr1 (88085659-88085442)
               

               
               3-220, gnl|Hg17|chr3 (135561036-135560816)
               

               
               3-220, gnl|Mm7|chr9 (102422151-102422359)
               


               
               225-325, gnl|bosTau2|chr1 (88084898-88084799)
               

               
               225-325, gnl|Hg17|chr3 (135560242-135560125)
               

               
               225-325, gnl|Mm7|chr9 (102422983-102423100)
               


               
               387-495, gnl|bosTau2|chr1 (88083979-88083871)
               

               
               387-495, gnl|Hg17|chr3 (135559304-135559190)
               

               
               387-495, gnl|Mm7|chr9 (102423823-102423961)
               


               
               601-936, gnl|bosTau2|chr1 (88083854-88083546)
               

               
               601-936, gnl|Hg17|chr3 (135559095-135558743)
               

               
               601-936, gnl|Mm7|chr9 (102423977-102424304)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-220, gnl|bosTau2|chr1 (88085659-88085442)
               

               
               3-220, gnl|Hg17|chr3 (135561036-135560816)
               

               
               3-220, gnl|Mm7|chr9 (102422151-102422359)
               


               
               225-325, gnl|bosTau2|chr1 (88084898-88084799)
               

               
               225-325, gnl|Hg17|chr3 (135560242-135560125)
               

               
               225-325, gnl|Mm7|chr9 (102422983-102423100)
               


               
               387-495, gnl|bosTau2|chr1 (88083979-88083871)
               

               
               387-495, gnl|Hg17|chr3 (135559304-135559190)
               

               
               387-495, gnl|Mm7|chr9 (102423823-102423961)
               


               
               601-936, gnl|bosTau2|chr1 (88083854-88083546)
               

               
               601-936, gnl|Hg17|chr3 (135559095-135558743)
               

               
               601-936, gnl|Mm7|chr9 (102423977-102424304)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               nep (0.183925)
               

               
               csp (0.161186)
               

               
               pla (0.133672)
               

               
               eru (0.120048)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               csp (0.161186)
               

               
               pla (0.133672)
               

               
               eru (0.120048)

	3-220, gnl\|bosTau2\|chr1 (88085659-88085442)
	3-220, gnl\|Hg17\|chr3 (135561036-135560816)
	3-220, gnl\|Mm7\|chr9 (102422151-102422359)

	225-325, gnl\|bosTau2\|chr1 (88084898-88084799)
	225-325, gnl\|Hg17\|chr3 (135560242-135560125)
	225-325, gnl\|Mm7\|chr9 (102422983-102423100)

	387-495, gnl\|bosTau2\|chr1 (88083979-88083871)
	387-495, gnl\|Hg17\|chr3 (135559304-135559190)
	387-495, gnl\|Mm7\|chr9 (102423823-102423961)

	601-936, gnl\|bosTau2\|chr1 (88083854-88083546)
	601-936, gnl\|Hg17\|chr3 (135559095-135558743)
	601-936, gnl\|Mm7\|chr9 (102423977-102424304)