Ss1.1-Mixc-0037,h16.5
|
AAAAAAACCATGTCGGGACTTGGACCTGCAGAACATGAGTCTCCTTCCCGGTCCGACCCT
CTTCCAGGACCCTCTAGACAGCCTGGTAACCTCCGAGCCTGACCTTCTAGGCACGGGTCC
CCTTCTTCTGGGCCTTTTTGAGCAGGACCCCCTCCCCCACTCGTGCCGCCAGTTCGGATC
TTGGAGACGCTCCCAAGGGACAGAACTATCCCCAAGTCAGAGCCTCGGAAAGCCCGACAC
CCTCCCCCCGGCGAGGGTCTCCTCTCCGGCCGAAGAGGAGGACGCAGGATGAGGGCCCTG
CGGGTCTCCCAGGCTCTGGTCCGCTCCTTTAGCTCAACCGCCCGGAACCGCTTGGAGAAC
CGAGTGGCTGAGAAACAGAAAATCTTCCAGGCGGACAATGACCTCCCGGTGCATTTGAAG
GGCGGTGCAACTGACAACATCCTGTACCGAGTGACTATGACTCTGTGTCTGGGGGGCACT
GTCTATAGCCTGTACTGCCTCGGCTGGGCCTCCTTCCCTCACAAGAAGTGAGACCAAGAA
GTCTGCAGGACCTCAACAAGCATCAATAAATGTTCTGGCTTCCTGGGGAACCCAGCCCTG
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AAAAAAACCATGTCGGGACTTGGACCTGCAGAACATGAGTCTCCTTCCCGGTCCGACCCT
CTTCCAGGACCCTCTAGACAGCCTGGTAACCTCCGAGCCTGACCTTCTAGGCACGGGTCC
CCTTCTTCTGGGCCTTTTTGAGCAGGACCCCCTCCCCCACTCGTGCCGCCAGTTCGGATC
TTGGAGACGCTCCCAAGGGACAGAACTATCCCCAAGTCAGAGCCTCGGAAAGCCCGACAC
CCTCCCCCCGGCGAGGGTCTCCTCTCCGGCCGAAGAGGAGGACGCAGGATGAGGGCCCTG
CGGGTCTCCCAGGCTCTGGTCCGCTCCTTTAGCTCAACCGCCCGGAACCGCTTGGAGAAC
CGAGTGGCTGAGAAACAGAAAATCTTCCAGGCGGACAATGACCTCCCGGTGCATTTGAAG
GGCGGTGCAACTGACAACATCCTGTACCGAGTGACTATGACTCTGTGTCTGGGGGGCACT
GTCTATAGCCTGTACTGCCTCGGCTGGGCCTCCTTCCCTCACAAGAAGTGAGACCAAGAA
GTCTGCAGGACCTCAACAAGCATCAATAAATGTTCTGGCTTCCTGGGGAACCCAGCCCTG
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-394, gnl|bosTau2|chr18 (41925864-41925468) |
|
1-394, gnl|Hg17|chr19 (41334776-41334407) |
| |
|
475-598, gnl|bosTau2|chr18 (41924873-41924750) |
|
475-598, gnl|canFam2|chr1 (119457914-119457808) |
|
475-598, gnl|Hg17|chr19 (41333777-41333649) |
|
475-598, gnl|hg17|chr6 (85455661-85455779) |
|
475-598, gnl|loxAfr1|scaffold_7688 (38158-38060) |
|
475-598, gnl|oryCun1|scaffold_80867 (1116-1003) |
|
475-598, gnl|panTro1|chr5 (87168724-87168842) |
|
475-598, gnl|rheMac2|chr4 (80708408-80708526) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-394, gnl|bosTau2|chr18 (41925864-41925468) |
|
1-394, gnl|Hg17|chr19 (41334776-41334407) |
| |
|
475-598, gnl|bosTau2|chr18 (41924873-41924750) |
|
475-598, gnl|canFam2|chr1 (119457914-119457808) |
|
475-598, gnl|Hg17|chr19 (41333777-41333649) |
|
475-598, gnl|hg17|chr6 (85455661-85455779) |
|
475-598, gnl|loxAfr1|scaffold_7688 (38158-38060) |
|
475-598, gnl|oryCun1|scaffold_80867 (1116-1003) |
|
475-598, gnl|panTro1|chr5 (87168724-87168842) |
|
475-598, gnl|rheMac2|chr4 (80708408-80708526) |
|
hlv (2.08885) |
|
ton (0.702001) |
|
mas (0.630915) |
|
nms (0.427716) |
|
nlu (0.383362) |
|
fhi (0.339155) |
|
vin (0.332557) |
|
csp (0.322373) |
|
cli (0.305623) |
|
fli (0.202881) |
|
col (0.195008) |
|
nep (0.183925) |
|
fbs (0.175346) |
|
eli (0.151814) |
|
cag (0.151194) |
|
hyp (0.142837) |
|
che (0.136314) |
|
nmm (0.132802) |
|
cov (0.132153) |
|
cly (0.120642) |
|
jca (0.11396) |
|
hlv (2.08885) |
|
ton (0.702001) |
|
mas (0.630915) |
|
nms (0.427716) |
|
nlu (0.383362) |
|
fhi (0.339155) |
|
vin (0.332557) |
|
csp (0.322373) |
|
cli (0.305623) |
|
fli (0.202881) |
|
col (0.195008) |
|
nep (0.183925) |
|
fbs (0.175346) |
|
eli (0.151814) |
|
cag (0.151194) |
|
hyp (0.142837) |
|
che (0.136314) |
|
nmm (0.132802) |
|
cov (0.132153) |
|
cly (0.120642) |
|
jca (0.11396) |
