Ss1.1-Mixc-0037,m18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGAGGCCTCGGGCCACTAGGAAGCGGGAGTCTCTCACAGCTCACGTTGGTCCTGACCCC TGCTCTGCTACCCCCTGAACCTAATTCCCGGTCCTCAAGGACCCAGTCCCTTAGCACCAC TCCTGAGCCTACCCTCCCTCAGCTTCCTGAGGCACCGGCTCATGCTCCCCAGATCCCAAA GGTGGAGGCAGCAGGTAGACCTGGCTTCACCCTAGAGCCCCAGCCGAAGGCCACCCAAAA GCGCAAGAGGCCTTTGGCTCCTGCAGATTCACCCCCACTTCCAAAACGGCTCCAAAGAGG GGAAGTGCCCCCGAAGACAGTGATCCTCGAGGAAGAAGAAAATCCTACAGCAAGGCCTGG GAGAGAAGAGTTCTCTCAATCCCAGGATGCAGTGATTCCAGAACCAGGCAAGAGAAAGAG AGACCAGACCGAGGAGGAGCCCCGGGGAGTACCGAGCCGCAGCCTGCGCCGGACCAAACC TGCACAAGAGTCCACGGCCCCCAGAGTGCTCTTCACGGGTGTGGTGGATGCTCGTGGAGA GCGGGCGGTGCTGGCCCTGGGGGGCAGTCTGGCCAGCTCAGTGGCCGAGGCGTCCCATTT GGTGACCGATCGGATCCGCCGGACAGTCAAGTTCCTGTGTGCCCTGGGGCGGGGCATCCC CATCCTCTCCCTGGACTGGCTGCATCAGTCCCGAAAGGCAGGTTGCTTCTTGCCTCCAGA TGAGTATGTGGTGACTGATCCTGAGCAGGAGAAGAACTTTGGCTTCAGCCTCCGGGAGGC CCTGAGCCGGGCTCGGGAGAGAAAGCTGCTAGAGGGCTATGAGATTCACGTGACCCCAGG AGTCCAGCCACCGCCCCCTCAGATGGGAGAGATCATCAGCTGCTGTGGGGGCACCGTCCT ACCCAGCATGCCCCGCTCCTATAAGCCTCAGAGAGTTGTGATCACGTGCTCCCAGGACTT CCCTCGATGCTCCGTTCCATTTCGGCTTGGGCTGCCTGTCCTCTCACCTGAGTTCCTGCT GACAGGAGTCCTGAAGCAGGAGGCCAAGCCAGAGGCCTTTGTCCTCTCCACTTTGGAAAT GGCATCTGCCTGAAAACCCCACCCCAGGACCACCCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGAGGCCTCGGGCCACTAGGAAGCGGGAGTCTCTCACAGCTCACGTTGGTCCTGACCCC TGCTCTGCTACCCCCTGAACCTAATTCCCGGTCCTCAAGGACCCAGTCCCTTAGCACCAC TCCTGAGCCTACCCTCCCTCAGCTTCCTGAGGCACCGGCTCATGCTCCCCAGATCCCAAA GGTGGAGGCAGCAGGTAGACCTGGCTTCACCCTAGAGCCCCAGCCGAAGGCCACCCAAAA GCGCAAGAGGCCTTTGGCTCCTGCAGATTCACCCCCACTTCCAAAACGGCTCCAAAGAGG GGAAGTGCCCCCGAAGACAGTGATCCTCGAGGAAGAAGAAAATCCTACAGCAAGGCCTGG GAGAGAAGAGTTCTCTCAATCCCAGGATGCAGTGATTCCAGAACCAGGCAAGAGAAAGAG AGACCAGACCGAGGAGGAGCCCCGGGGAGTACCGAGCCGCAGCCTGCGCCGGACCAAACC TGCACAAGAGTCCACGGCCCCCAGAGTGCTCTTCACGGGTGTGGTGGATGCTCGTGGAGA GCGGGCGGTGCTGGCCCTGGGGGGCAGTCTGGCCAGCTCAGTGGCCGAGGCGTCCCATTT GGTGACCGATCGGATCCGCCGGACAGTCAAGTTCCTGTGTGCCCTGGGGCGGGGCATCCC CATCCTCTCCCTGGACTGGCTGCATCAGTCCCGAAAGGCAGGTTGCTTCTTGCCTCCAGA TGAGTATGTGGTGACTGATCCTGAGCAGGAGAAGAACTTTGGCTTCAGCCTCCGGGAGGC CCTGAGCCGGGCTCGGGAGAGAAAGCTGCTAGAGGGCTATGAGATTCACGTGACCCCAGG AGTCCAGCCACCGCCCCCTCAGATGGGAGAGATCATCAGCTGCTGTGGGGGCACCGTCCT ACCCAGCATGCCCCGCTCCTATAAGCCTCAGAGAGTTGTGATCACGTGCTCCCAGGACTT CCCTCGATGCTCCGTTCCATTTCGGCTTGGGCTGCCTGTCCTCTCACCTGAGTTCCTGCT GACAGGAGTCCTGAAGCAGGAGGCCAAGCCAGAGGCCTTTGTCCTCTCCACTTTGGAAAT GGCATCTGCCTGAAAACCCCACCCCAGGACCACCCC |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 166-285, - strand, RNAz p=0.99969 | |
| 992-1111, - strand, RNAz p=0.68623 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 166-285, - strand, RNAz p=0.99969 | |
| 992-1111, - strand, RNAz p=0.68623 |
| Predicted microRNA(s): 1 entry(ies) | More info |
| Predicted microRNA(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 64-180, - strand, RNAmicro p=0.965196 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 52-370, gnl|bosTau2|chr23 (20816658-20816981) | |
| 52-370, gnl|canFam2|chr12 (3500488-3501078) | |
| 52-370, gnl|dasNov1|scaffold_136353 (921-1420) | |
| 52-370, gnl|echTel1|scaffold_221443 (5900-6468) | |
| 52-370, gnl|hg17|chr6 (30779092-30779691) | |
| 52-370, gnl|Hg17|chr6 (30779703-30779377) | |
| 52-370, gnl|loxAfr1|scaffold_43794 (4964-4341) | |
| 52-370, gnl|mm7|chr17 (33957353-33956843) | |
| 52-370, gnl|Mm7|chr17 (33956829-33957107) | |
| 52-370, gnl|monDom2|scaffold_42 (18624194-18623578) | |
| 52-370, gnl|oryCun1|scaffold_196183 (863-318) | |
| 52-370, gnl|panTro1|chr5 (31240507-31241106) | |
| 52-370, gnl|rn3|chr20 (3047031-3047513) | |
| 506-688, gnl|bosTau2|chr23 (20817306-20817488) | |
| 506-688, gnl|canFam2|chr12 (3500251-3500444) | |
| 506-688, gnl|dasNov1|scaffold_136353 (698-891) | |
| 506-688, gnl|echTel1|scaffold_221443 (5663-5856) | |
| 506-688, gnl|fr1|chrUn (204802559-204802752) | |
| 506-688, gnl|hg17|chr6 (30778856-30779049) | |
| 506-688, gnl|Hg17|chr6 (30779042-30778860) | |
| 506-688, gnl|loxAfr1|scaffold_43794 (5203-5008) | |
| 506-688, gnl|mm7|chr17 (33957600-33957407) | |
| 506-688, gnl|Mm7|chr17 (33957412-33957594) | |
| 506-688, gnl|monDom2|scaffold_42 (18625001-18624808) | |
| 506-688, gnl|oryCun1|scaffold_196183 (1094-901) | |
| 506-688, gnl|panTro1|chr5 (31240271-31240464) | |
| 506-688, gnl|rn3|chr20 (3046794-3046984) | |
| 506-688, gnl|tetNig1|chr8 (9260951-9260758) | |
| 924-1111, gnl|bosTau2|chr23 (20818968-20819155) | |
| 924-1111, gnl|Hg17|chr6 (30776390-30776208) | |
| 924-1111, gnl|Mm7|chr17 (33960456-33960637) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 52-370, gnl|bosTau2|chr23 (20816658-20816981) | |
| 52-370, gnl|canFam2|chr12 (3500488-3501078) | |
| 52-370, gnl|dasNov1|scaffold_136353 (921-1420) | |
| 52-370, gnl|echTel1|scaffold_221443 (5900-6468) | |
| 52-370, gnl|hg17|chr6 (30779092-30779691) | |
| 52-370, gnl|Hg17|chr6 (30779703-30779377) | |
| 52-370, gnl|loxAfr1|scaffold_43794 (4964-4341) | |
| 52-370, gnl|mm7|chr17 (33957353-33956843) | |
| 52-370, gnl|Mm7|chr17 (33956829-33957107) | |
| 52-370, gnl|monDom2|scaffold_42 (18624194-18623578) | |
| 52-370, gnl|oryCun1|scaffold_196183 (863-318) | |
| 52-370, gnl|panTro1|chr5 (31240507-31241106) | |
| 52-370, gnl|rn3|chr20 (3047031-3047513) | |
| 506-688, gnl|bosTau2|chr23 (20817306-20817488) | |
| 506-688, gnl|canFam2|chr12 (3500251-3500444) | |
| 506-688, gnl|dasNov1|scaffold_136353 (698-891) | |
| 506-688, gnl|echTel1|scaffold_221443 (5663-5856) | |
| 506-688, gnl|fr1|chrUn (204802559-204802752) | |
| 506-688, gnl|hg17|chr6 (30778856-30779049) | |
| 506-688, gnl|Hg17|chr6 (30779042-30778860) | |
| 506-688, gnl|loxAfr1|scaffold_43794 (5203-5008) | |
| 506-688, gnl|mm7|chr17 (33957600-33957407) | |
| 506-688, gnl|Mm7|chr17 (33957412-33957594) | |
| 506-688, gnl|monDom2|scaffold_42 (18625001-18624808) | |
| 506-688, gnl|oryCun1|scaffold_196183 (1094-901) | |
| 506-688, gnl|panTro1|chr5 (31240271-31240464) | |
| 506-688, gnl|rn3|chr20 (3046794-3046984) | |
| 506-688, gnl|tetNig1|chr8 (9260951-9260758) | |
| 924-1111, gnl|bosTau2|chr23 (20818968-20819155) | |
| 924-1111, gnl|Hg17|chr6 (30776390-30776208) | |
| 924-1111, gnl|Mm7|chr17 (33960456-33960637) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eli (0.151814) | |
| eep (0.122564) | |
| eru (0.120048) |