Non-Coding RNA Search

Ss1.1-Mixc-0037,m21.5

Sequence:


               
               TTTTGTTACTCTGGTTGTTGTGCCAAATTGTGGTACACTTAGAAAATTCTACAGTCGTCG
ATTTTTAGGGTGTTCTATTTCAACACCTTTTTGTTAGTAATCATTGCCAGTAGTGCCTTC
ATCAGTTAAGGGAGGTGTCCCAGCATAGTTTATTCTCTAAAACAGACAGTGAAGAGCTAG
TTGGGAAAGTTGAAGGCCAGTGTGGACCAATCGGTGTGAACAGGCACACACCTTCAAAGC
TGAACCTGGGCATCTTCATTGAGGGAAAGAAAACAGCAATTGTGCAAAATTCTGTTAGTC
AGTGATTCTTTACTGTGCAGATCCTTGCAAATTCAGGGGCTCAGAAAATGAAAGTGAATA
CAAACCTTGAGTGTGCTTTGGGAACCAAATGGACTTTATGGGACAAGCTGAACAAGCTGA
ACACCACACACCATGTTTGTGAAGAGGGGGGCAAGTGGCAGGGGAGCCGGCACTGCCGGC
CTCATGCAGTGGGATGAGGGCTAGCCATAGTATTCTTTGCAAATGTGAGAAAGAGACTTC
CTGTATCCTCTTGCTCGGTGTAACTAATCACTGTTAATTTCAGGAAACAGAACTCTCTAA
AGCTCCTTAGCAAACCAGGTCTACGTCCCATCCTGATTTGCTGAGTGAGGTTGTGCGAAT
GGTCAAATTGGTACTCTCGGAGGAAGAAGAAAAAGTGTCCTCCCTCCTCTAAAATGCAGG
ACAAATTATAATAATATAAGTAGCAAAAATAAAAGATTCTGTTTCCTGGAATAGCATTTC
TTATTCCTAGTTGTAAGGACCCCTATTTTTACCTTATCTTACAGTGTTGATTCATAAGGA
ATAATGTTACATTTACGAAAACTTCATCTGTATGGGGTATTTATTTGCAATGACGTCTGA
GTACTGTATTTTTTTCTGTGCATTACCTTAGTGTCAGAATGTTGTCTTTATTTTAAGATC
ATATGCATGTCCTCCTGCCAAGGAACCTTTACACAGACCCAAACAAACAAAAATGCCTTC
AGATTCTGAAAAAATGAGGCACAGCATGGAAAAAGGATTAGAAAGAAGAAATCAGGCACA
ACTTGGGACACAGACATATGGTGCAAATGTCTATAAAAGCCAGTGCACATAGGAATGGTG
GGCCTGGGTAAAGGGTCATGTTGGTAGGACCGGTAAATAAAGAATAATAAAAAGACAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTGTTACTCTGGTTGTTGTGCCAAATTGTGGTACACTTAGAAAATTCTACAGTCGTCG
ATTTTTAGGGTGTTCTATTTCAACACCTTTTTGTTAGTAATCATTGCCAGTAGTGCCTTC
ATCAGTTAAGGGAGGTGTCCCAGCATAGTTTATTCTCTAAAACAGACAGTGAAGAGCTAG
TTGGGAAAGTTGAAGGCCAGTGTGGACCAATCGGTGTGAACAGGCACACACCTTCAAAGC
TGAACCTGGGCATCTTCATTGAGGGAAAGAAAACAGCAATTGTGCAAAATTCTGTTAGTC
AGTGATTCTTTACTGTGCAGATCCTTGCAAATTCAGGGGCTCAGAAAATGAAAGTGAATA
CAAACCTTGAGTGTGCTTTGGGAACCAAATGGACTTTATGGGACAAGCTGAACAAGCTGA
ACACCACACACCATGTTTGTGAAGAGGGGGGCAAGTGGCAGGGGAGCCGGCACTGCCGGC
CTCATGCAGTGGGATGAGGGCTAGCCATAGTATTCTTTGCAAATGTGAGAAAGAGACTTC
CTGTATCCTCTTGCTCGGTGTAACTAATCACTGTTAATTTCAGGAAACAGAACTCTCTAA
AGCTCCTTAGCAAACCAGGTCTACGTCCCATCCTGATTTGCTGAGTGAGGTTGTGCGAAT
GGTCAAATTGGTACTCTCGGAGGAAGAAGAAAAAGTGTCCTCCCTCCTCTAAAATGCAGG
ACAAATTATAATAATATAAGTAGCAAAAATAAAAGATTCTGTTTCCTGGAATAGCATTTC
TTATTCCTAGTTGTAAGGACCCCTATTTTTACCTTATCTTACAGTGTTGATTCATAAGGA
ATAATGTTACATTTACGAAAACTTCATCTGTATGGGGTATTTATTTGCAATGACGTCTGA
GTACTGTATTTTTTTCTGTGCATTACCTTAGTGTCAGAATGTTGTCTTTATTTTAAGATC
ATATGCATGTCCTCCTGCCAAGGAACCTTTACACAGACCCAAACAAACAAAAATGCCTTC
AGATTCTGAAAAAATGAGGCACAGCATGGAAAAAGGATTAGAAAGAAGAAATCAGGCACA
ACTTGGGACACAGACATATGGTGCAAATGTCTATAAAAGCCAGTGCACATAGGAATGGTG
GGCCTGGGTAAAGGGTCATGTTGGTAGGACCGGTAAATAAAGAATAATAAAAAGACAAAA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               1-119, - strand, RNAz p=0.548708
               

               
               433-704, + strand, RNAz p=0.851041
               

               
               658-774, - strand, RNAz p=0.931557

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.548708
               

               
               433-704, + strand, RNAz p=0.851041
               

               
               658-774, - strand, RNAz p=0.931557

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               614-660, + strand, RNAmicro p=0.977087

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               614-660, + strand, RNAmicro p=0.977087

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_001003800, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_001003800, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-1199, gnl|bosTau2|chr8 (45746093-45744895)
               

               
               1-1199, gnl|Hg17|chr9 (92554387-92553205)
               

               
               1-1199, gnl|Mm7|chr13 (48869757-48870898)
               


               
               620-1198, gnl|bosTau2|chr7 (30950549-30951126)
               

               
               620-1198, gnl|Hg17|chr9 (92553786-92553206)
               

               
               620-1198, gnl|Mm7|chr13 (48870346-48870894)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1199, gnl|bosTau2|chr8 (45746093-45744895)
               

               
               1-1199, gnl|Hg17|chr9 (92554387-92553205)
               

               
               1-1199, gnl|Mm7|chr13 (48869757-48870898)
               


               
               620-1198, gnl|bosTau2|chr7 (30950549-30951126)
               

               
               620-1198, gnl|Hg17|chr9 (92553786-92553206)
               

               
               620-1198, gnl|Mm7|chr13 (48870346-48870894)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               fhi (0.339155)
               

               
               fce (0.271592)
               

               
               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               csp (0.161186)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               tra (0.123092)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.339155)
               

               
               fce (0.271592)
               

               
               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               csp (0.161186)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               tra (0.123092)

	1-119, - strand, RNAz p=0.548708
	433-704, + strand, RNAz p=0.851041
	658-774, - strand, RNAz p=0.931557

	1-1199, gnl\|bosTau2\|chr8 (45746093-45744895)
	1-1199, gnl\|Hg17\|chr9 (92554387-92553205)
	1-1199, gnl\|Mm7\|chr13 (48869757-48870898)

	620-1198, gnl\|bosTau2\|chr7 (30950549-30951126)
	620-1198, gnl\|Hg17\|chr9 (92553786-92553206)
	620-1198, gnl\|Mm7\|chr13 (48870346-48870894)

	fhi (0.339155)
	fce (0.271592)
	mgp (0.230681)
	sag (0.182715)
	fty (0.17584)
	csp (0.161186)
	fat (0.147427)
	liv (0.146284)
	lyg (0.133103)
	ova (0.129132)
	ret (0.128733)
	thg (0.126791)
	tra (0.123092)