Non-Coding RNA Search

Ss1.1-Mixc-0038,g10.5

Sequence:


               
               CTCTAATTGCTCCTATTTCCTTTTTTGGCAATAAAACACTGTTGTATTATGTAAATGTAG
GTAAAAAAGGATAGAGACTATCTGTAACAGTTTATGTGTAGTGAACGTTGACACCTCTGA
GATATTTTGAAACATGAGGCAACAAATAAGGACCTCGGATTCCCCAGGGAAATATTTATT
TGACAGCATTGGGAGTGTAGCTCTTAATAATGAAACAGCTTCTTTCTGCTAAGAATGATC
ATTTTTCAGTAGATTTTTCATTTTGAGAACTGTGAGTATTTTCTCTGTCAGATTTATATA
GAACCTGGTCTAGCCTTTACACCATTTGAAAGGACAATCTGAACCTTAGCTATTTATATT
TCAGTATTAACACACCTTCATTGATTGAAAATGGAGTCTGGAGATCTTCTCTACTTTTAT
TAAGTGAATCCTATTCCCAAGTCATCCACTATATTTGAAGTCCGTGTTTCTTATATAAGT
ATTTGTTACCTTACCCTTTCACATAAAAGGAGACAGAAATAAACAATAAACTACAAGGTC
TCTTATTTCTATTAAAATACTTTATAAATCTCTTGAATCAAAATGATTTCCAAGCTTTCT
GAAGAGGATGCCAACGGAGTGTGATCAGAATAATTCAAGGAGAACCTTATCCTTTCAGAT
CTTAGCAGACCTGATCCTCCTCTCAAGGACAAAATAAAGATTGGCTCCAAAAATGTATCA
CATTGAGCATTTAATACCAGAGTAGAAAAAAATCAACCAAAAAATTTCTCTTCATTAGAA
GGAATCCAGGGTATCCTTGGGTAGAGTGGGAGAGAATCATGCTTGACTAGATTTCCTAAA
TGTTTTGCGTGTGGCTCCAGGCTCTATTCCAAACAACGGACAGATCTTGGTAACAGTAGA
GAGGTACAGTAAGAGTTCCTGTTGTCAATCAAATGAGGGTGTTAAACATACAGAAAAAGT
CCTCTGTGTTACACTTGAACCATGTATAAATGTACTCTGTGTATCTTTTTTTTTAAATGA
GCATTTCTGCATTTAAATTATATTGTTTTTCTTGGTGTTGTTAACAGAATGCATCAAAAC
TGGATTTTTTAATTTCTCATCTGAACATAATTAAAATTTAAAGAGTATTGTGATATCAAG
CACTTTAACATACGTTATCAGAGAAACTGATGTGGGTTTTTCAGGTTTTGGAGTACATTT
AAATATGACTTTTCATGCTTTGTTCTTTACAAATAAAACTGTGGGGTTGATAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTAATTGCTCCTATTTCCTTTTTTGGCAATAAAACACTGTTGTATTATGTAAATGTAG
GTAAAAAAGGATAGAGACTATCTGTAACAGTTTATGTGTAGTGAACGTTGACACCTCTGA
GATATTTTGAAACATGAGGCAACAAATAAGGACCTCGGATTCCCCAGGGAAATATTTATT
TGACAGCATTGGGAGTGTAGCTCTTAATAATGAAACAGCTTCTTTCTGCTAAGAATGATC
ATTTTTCAGTAGATTTTTCATTTTGAGAACTGTGAGTATTTTCTCTGTCAGATTTATATA
GAACCTGGTCTAGCCTTTACACCATTTGAAAGGACAATCTGAACCTTAGCTATTTATATT
TCAGTATTAACACACCTTCATTGATTGAAAATGGAGTCTGGAGATCTTCTCTACTTTTAT
TAAGTGAATCCTATTCCCAAGTCATCCACTATATTTGAAGTCCGTGTTTCTTATATAAGT
ATTTGTTACCTTACCCTTTCACATAAAAGGAGACAGAAATAAACAATAAACTACAAGGTC
TCTTATTTCTATTAAAATACTTTATAAATCTCTTGAATCAAAATGATTTCCAAGCTTTCT
GAAGAGGATGCCAACGGAGTGTGATCAGAATAATTCAAGGAGAACCTTATCCTTTCAGAT
CTTAGCAGACCTGATCCTCCTCTCAAGGACAAAATAAAGATTGGCTCCAAAAATGTATCA
CATTGAGCATTTAATACCAGAGTAGAAAAAAATCAACCAAAAAATTTCTCTTCATTAGAA
GGAATCCAGGGTATCCTTGGGTAGAGTGGGAGAGAATCATGCTTGACTAGATTTCCTAAA
TGTTTTGCGTGTGGCTCCAGGCTCTATTCCAAACAACGGACAGATCTTGGTAACAGTAGA
GAGGTACAGTAAGAGTTCCTGTTGTCAATCAAATGAGGGTGTTAAACATACAGAAAAAGT
CCTCTGTGTTACACTTGAACCATGTATAAATGTACTCTGTGTATCTTTTTTTTTAAATGA
GCATTTCTGCATTTAAATTATATTGTTTTTCTTGGTGTTGTTAACAGAATGCATCAAAAC
TGGATTTTTTAATTTCTCATCTGAACATAATTAAAATTTAAAGAGTATTGTGATATCAAG
CACTTTAACATACGTTATCAGAGAAACTGATGTGGGTTTTTCAGGTTTTGGAGTACATTT
AAATATGACTTTTCATGCTTTGTTCTTTACAAATAAAACTGTGGGGTTGATAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               5-1252, gnl|bosTau2|chr5 (45889585-45888354)
               

               
               5-1252, gnl|Hg17|chr12 (31427633-31426427)
               

               
               5-1252, gnl|Mm7|chr6 (149068086-149066390)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-1252, gnl|bosTau2|chr5 (45889585-45888354)
               

               
               5-1252, gnl|Hg17|chr12 (31427633-31426427)
               

               
               5-1252, gnl|Mm7|chr6 (149068086-149066390)

Expressed library(ies): 13 entry(ies)

More info

Expressed library(ies): 13 entry(ies)

Help | Less info


               
               vin (0.332557)
               

               
               fce (0.271592)
               

               
               sug (0.254582)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               sag (0.182715)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               hlv (0.139256)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               fce (0.271592)
               

               
               sug (0.254582)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               sag (0.182715)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               hlv (0.139256)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

	5-1252, gnl\|bosTau2\|chr5 (45889585-45888354)
	5-1252, gnl\|Hg17\|chr12 (31427633-31426427)
	5-1252, gnl\|Mm7\|chr6 (149068086-149066390)

	vin (0.332557)
	fce (0.271592)
	sug (0.254582)
	jej (0.197844)
	fcc (0.197785)
	sag (0.182715)
	fhi (0.169578)
	nje (0.16592)
	hlv (0.139256)
	lyg (0.133103)
	kid (0.129735)
	ecc (0.115035)
	spc (0.113366)