Ss1.1-Mixc-0038,l13.5
|
TCTTAACCTTTCCCGAATGATTCACATGGACTAATCTTTCTGATCTGTAAATACTTCAAA
AAAAAAAAAAAAAGGTAGTTTTGTATCAATCTAAATGAGTCACAGTTCAAAAATATGCAT
TTCAATCTTTTCATAATTGTTGACCTAAGAAGATTATACATTTTCTAGTGACATGTACAT
ACTGTATATAGCCGAATTAACGGTTATAAAGTTTTGTACCATTTATTTTATGACATTTTA
CAATGTAACTATTGCAACTAACTGTTGGTAGGAGAAAGTTTCTTGAGGAACGAATACCCT
GCTCAACACTTAATCAATCTTTGTGCCTCAACATAATGTTGATGTCTAAGTATGCCTCAG
TGGGTCGAGAAATTCCCCATTGAAGATGTCCTATCCACCGAAACGAAATGCCGTGCACAT
CACCTGACATGTGTACCCATACTTATTGAATCAGAAATGTAAGGCATTGGTGATGTTTGC
ATTTACCCTCCTGTAAGCAGCACTTTAACGTCTTACATTTTCTCTGATGATGTCACACTC
AAAATTATTATGACAAATACTACCAGAGCAAAGTGCAACGGCCAGCACTTTGTTCGCTCA
TTTCACACTGCCTCTGACCATAGAGAGTGCCTGAGTAGCTTGGAAAAGTAACATCGCCTG
GCCATCCCCTCGTTTAACCAAGCTATTCATGTATTCCTATGCCAGAGCAGTGCCAACTCT
TGGAGGTCCTGGGGTGCAGCCAACGCCTTCGTGTGGTAGCTCCAAATTTAAATTACACCA
GAGAAACCAGGGCAACTAAGCAATGAGCCACAGCAAAAAATAAAGAACAACAAGAACAAC
AAAAGAAAGCTGTCGTTAAACAACACTATCACTAACTGCCCAGAATATCAATTTGATTGT
AGTTCTTTTCATGCAGGTTTAAGTTCGATTGTTAGTTATAATTGTTTGACCTCCTTGAGA
TAGTGACAACAAAATAAAGCAAGCTATCTGCACCTCAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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TCTTAACCTTTCCCGAATGATTCACATGGACTAATCTTTCTGATCTGTAAATACTTCAAA
AAAAAAAAAAAAAGGTAGTTTTGTATCAATCTAAATGAGTCACAGTTCAAAAATATGCAT
TTCAATCTTTTCATAATTGTTGACCTAAGAAGATTATACATTTTCTAGTGACATGTACAT
ACTGTATATAGCCGAATTAACGGTTATAAAGTTTTGTACCATTTATTTTATGACATTTTA
CAATGTAACTATTGCAACTAACTGTTGGTAGGAGAAAGTTTCTTGAGGAACGAATACCCT
GCTCAACACTTAATCAATCTTTGTGCCTCAACATAATGTTGATGTCTAAGTATGCCTCAG
TGGGTCGAGAAATTCCCCATTGAAGATGTCCTATCCACCGAAACGAAATGCCGTGCACAT
CACCTGACATGTGTACCCATACTTATTGAATCAGAAATGTAAGGCATTGGTGATGTTTGC
ATTTACCCTCCTGTAAGCAGCACTTTAACGTCTTACATTTTCTCTGATGATGTCACACTC
AAAATTATTATGACAAATACTACCAGAGCAAAGTGCAACGGCCAGCACTTTGTTCGCTCA
TTTCACACTGCCTCTGACCATAGAGAGTGCCTGAGTAGCTTGGAAAAGTAACATCGCCTG
GCCATCCCCTCGTTTAACCAAGCTATTCATGTATTCCTATGCCAGAGCAGTGCCAACTCT
TGGAGGTCCTGGGGTGCAGCCAACGCCTTCGTGTGGTAGCTCCAAATTTAAATTACACCA
GAGAAACCAGGGCAACTAAGCAATGAGCCACAGCAAAAAATAAAGAACAACAAGAACAAC
AAAAGAAAGCTGTCGTTAAACAACACTATCACTAACTGCCCAGAATATCAATTTGATTGT
AGTTCTTTTCATGCAGGTTTAAGTTCGATTGTTAGTTATAATTGTTTGACCTCCTTGAGA
TAGTGACAACAAAATAAAGCAAGCTATCTGCACCTCAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
467-545, + strand, RNAmicro p=0.999895 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
467-545, + strand, RNAmicro p=0.999895 |
|
391-738, Hw_loin_8_050812_D10 Bos taurus CF-24-HW loin cDNA library Bos
(gb|DV794789.1|), blast E-value=0, identity=91.43% |
|
391-738, Hw_Loin_11_0520_E09 Bos taurus CF-24-HW loin cDNA library Bos
(gb|DV796358.1|), blast E-value=0, identity=91.43% |
|
391-738, Hw-loin_37_G08 Bos taurus CF-24-HW loin cDNA library Bos taurus
(gb|DV796596.1|), blast E-value=0, identity=91.43% |
|
391-738, HW_Loin_1_G01 Bos taurus CF-24-HW loin cDNA library Bos taurus
(gb|DV797378.1|), blast E-value=0, identity=91.43% |
|
391-738, LB03013.CR_F17 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|DV928373.1|),
blast E-value=0, identity=91.43% |
|
391-738, LB03041.CR_N16 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE374228.1|),
blast E-value=0, identity=91.43% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
391-738, Hw_loin_8_050812_D10 Bos taurus CF-24-HW loin cDNA library Bos
(gb|DV794789.1|), blast E-value=0, identity=91.43% |
|
391-738, Hw_Loin_11_0520_E09 Bos taurus CF-24-HW loin cDNA library Bos
(gb|DV796358.1|), blast E-value=0, identity=91.43% |
|
391-738, Hw-loin_37_G08 Bos taurus CF-24-HW loin cDNA library Bos taurus
(gb|DV796596.1|), blast E-value=0, identity=91.43% |
|
391-738, HW_Loin_1_G01 Bos taurus CF-24-HW loin cDNA library Bos taurus
(gb|DV797378.1|), blast E-value=0, identity=91.43% |
|
391-738, LB03013.CR_F17 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|DV928373.1|),
blast E-value=0, identity=91.43% |
|
391-738, LB03041.CR_N16 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE374228.1|),
blast E-value=0, identity=91.43% |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
isp (2.70677) |
|
bfe (2.54758) |
|
tbr (2.31267) |
|
ste (2.29854) |
|
ctl (2.14297) |
|
ssp (2.0328) |
|
hea (1.63599) |
|
hlv (1.53182) |
|
vin (1.33023) |
|
mas (1.26183) |
|
sme (1.22175) |
|
ldo (1.16403) |
|
nms (1.06929) |
|
che (0.68157) |
|
ese (0.379507) |
|
tes (0.207814) |
|
nep (0.183925) |
|
eru (0.120048) |
|
isp (2.70677) |
|
bfe (2.54758) |
|
tbr (2.31267) |
|
ste (2.29854) |
|
ctl (2.14297) |
|
ssp (2.0328) |
|
hea (1.63599) |
|
hlv (1.53182) |
|
vin (1.33023) |
|
mas (1.26183) |
|
sme (1.22175) |
|
ldo (1.16403) |
|
nms (1.06929) |
|
che (0.68157) |
|
ese (0.379507) |
|
tes (0.207814) |
|
nep (0.183925) |
|
eru (0.120048) |