Ss1.1-Mixc-0039,b13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGGCGGTTGGCGGCGTTTGGAGCGGAGCCATGAGCGGCTCCTCGCGGTCCCTGAAAGGA ACACCGCGGTCGGGGCGGACGGCCAGATATAAAGGGGCGCCGAGTCGCCGCGGGGCGGGG GAGGGCGCCGCGCAGAGATGGGGGGCAGCGCCCAGAACCCGGGAGCCTTGCAAAGGGACG TCGCCCCCAGCCAGTCTCTGTACCAGCGGTTAAGTCAGAGGATGCTGGACATCTCCGGGG ACCGGGGCGTGTTGAAGGATGTCATCCGAGAGGGGACTGGAGAGCTGGTGACACCCGACG CTTCGGTGCTCGTGAAATATTCTGGATATCTGGAGCACATGGACAAGCCTTTTGATTCTA ACTGCTTTAGGAAAACTCCTCGGCTCATGAAACTTGGGGAGGACATCACACTTTGGGGCA TGGAGCTGGGCCTTCTGAGCATGCGGAGAGGAGAGCTGGCAAGGTTCCTGTTCAAACCGA CCTACGCCTACGGAACACTGGGCTGTCCTCCCCTGATCCCCCCAAACACCACCGTCCTAT TTGAGATTGAGCTGCTTGACTTCCTGGACTCTGCTGAGTCGGACAAGTTTTGTGCCCTCT CGGTGGATCAACAAGATCAGTTTCCACTCGAGAAGGTCCTAAAAGTGGCAGCTACCGAAC GGGAGTTTGGCAACTACCTTTTCCGCCAAAATCGATTCTATGATGCCAAAATGAGATATA AACGGGCCTTAGTGCTTCTCCACCGCCGATCAGCACCCTCTGAGGAGCAGCACCTGGTGG AGACCGCCAAGCTGCTGGTTCTCCTTAACTTGTCCTTTGTGTACCTGAAGCTGGAGCGAC CCGCCATGGCCCTGCGCTATGGAGAGCAGGCTCTGATCATTGACCAGAAGAATGCCAAGG CCCTCTTCCGGTGTGGACAGGCCTGTCTCCTCATGACTGAGTATCTGAAGGCCCGGGATT TCCTAGTCCGAGCCCAGAAGGAACAGCCCTTCAATCATGACATCAATAATGAGCTGAAGA AACTGGCCAGCTATTACAGGGACTACGTGGATAAAGAGAAAGAAATGTGTCACCGAATGT TTGCTCCTTGTGACAGTGGCCCTGCGGCAGGAGAAAACTGAAGATTACTCAGCTAACTAC AAGCAAGAGAAGCAAGGCTGCCTGGAGTTCGTCATCATTATAGGGGGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGGCGGTTGGCGGCGTTTGGAGCGGAGCCATGAGCGGCTCCTCGCGGTCCCTGAAAGGA ACACCGCGGTCGGGGCGGACGGCCAGATATAAAGGGGCGCCGAGTCGCCGCGGGGCGGGG GAGGGCGCCGCGCAGAGATGGGGGGCAGCGCCCAGAACCCGGGAGCCTTGCAAAGGGACG TCGCCCCCAGCCAGTCTCTGTACCAGCGGTTAAGTCAGAGGATGCTGGACATCTCCGGGG ACCGGGGCGTGTTGAAGGATGTCATCCGAGAGGGGACTGGAGAGCTGGTGACACCCGACG CTTCGGTGCTCGTGAAATATTCTGGATATCTGGAGCACATGGACAAGCCTTTTGATTCTA ACTGCTTTAGGAAAACTCCTCGGCTCATGAAACTTGGGGAGGACATCACACTTTGGGGCA TGGAGCTGGGCCTTCTGAGCATGCGGAGAGGAGAGCTGGCAAGGTTCCTGTTCAAACCGA CCTACGCCTACGGAACACTGGGCTGTCCTCCCCTGATCCCCCCAAACACCACCGTCCTAT TTGAGATTGAGCTGCTTGACTTCCTGGACTCTGCTGAGTCGGACAAGTTTTGTGCCCTCT CGGTGGATCAACAAGATCAGTTTCCACTCGAGAAGGTCCTAAAAGTGGCAGCTACCGAAC GGGAGTTTGGCAACTACCTTTTCCGCCAAAATCGATTCTATGATGCCAAAATGAGATATA AACGGGCCTTAGTGCTTCTCCACCGCCGATCAGCACCCTCTGAGGAGCAGCACCTGGTGG AGACCGCCAAGCTGCTGGTTCTCCTTAACTTGTCCTTTGTGTACCTGAAGCTGGAGCGAC CCGCCATGGCCCTGCGCTATGGAGAGCAGGCTCTGATCATTGACCAGAAGAATGCCAAGG CCCTCTTCCGGTGTGGACAGGCCTGTCTCCTCATGACTGAGTATCTGAAGGCCCGGGATT TCCTAGTCCGAGCCCAGAAGGAACAGCCCTTCAATCATGACATCAATAATGAGCTGAAGA AACTGGCCAGCTATTACAGGGACTACGTGGATAAAGAGAAAGAAATGTGTCACCGAATGT TTGCTCCTTGTGACAGTGGCCCTGCGGCAGGAGAAAACTGAAGATTACTCAGCTAACTAC AAGCAAGAGAAGCAAGGCTGCCTGGAGTTCGTCATCATTATAGGGGGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 804-921, - strand, RNAz p=0.951861 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 804-921, - strand, RNAz p=0.951861 |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 184-312, gnl|bosTau2|chr25 (28269698-28269571) | |
| 184-312, gnl|canFam2|chr6 (9869173-9869037) | |
| 184-312, gnl|danRer3|chr5 (61761169-61761038) | |
| 184-312, gnl|echTel1|scaffold_314928 (1496-1358) | |
| 184-312, gnl|galGal2|chr19 (180328-180194) | |
| 184-312, gnl|hg17|chr7 (71885122-71885260) | |
| 184-312, gnl|Hg17|chr7 (72187219-72187346) | |
| 184-312, gnl|loxAfr1|scaffold_25211 (39205-39070) | |
| 184-312, gnl|mm7|chr5 (134321032-134320896) | |
| 184-312, gnl|Mm7|chr5 (134321025-134320898) | |
| 184-312, gnl|monDom2|scaffold_77 (5669032-5669171) | |
| 184-312, gnl|panTro1|chr6 (75752947-75752809) | |
| 184-312, gnl|rheMac2|chr3 (50847213-50847351) | |
| 184-312, gnl|rn3|chr12 (22464864-22465000) | |
| 184-312, gnl|xenTro1|scaffold_32 (279751-279884) | |
| 402-601, gnl|bosTau2|chr25 (28268244-28268045) | |
| 402-601, gnl|canFam2|chr6 (9867816-9867563) | |
| 402-601, gnl|danRer3|chr5 (61759086-61758832) | |
| 402-601, gnl|galGal2|chr19 (178563-178329) | |
| 402-601, gnl|hg17|chr7 (71886686-71886941) | |
| 402-601, gnl|Hg17|chr7 (72188803-72189002) | |
| 402-601, gnl|loxAfr1|scaffold_25211 (37678-37424) | |
| 402-601, gnl|mm7|chr5 (134317584-134317352) | |
| 402-601, gnl|Mm7|chr5 (134317573-134317374) | |
| 402-601, gnl|monDom2|scaffold_77 (5670119-5670357) | |
| 402-601, gnl|panTro1|chr6 (75751399-75751144) | |
| 402-601, gnl|rheMac2|chr3 (50848773-50849028) | |
| 402-601, gnl|rn3|chr12 (22468269-22468512) | |
| 402-601, gnl|xenTro1|scaffold_32 (281358-281571) | |
| 725-921, gnl|bosTau2|chr25 (28261384-28261188) | |
| 725-921, gnl|Hg17|chr7 (72199290-72199486) | |
| 725-921, gnl|Mm7|chr5 (134311397-134311201) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 184-312, gnl|bosTau2|chr25 (28269698-28269571) | |
| 184-312, gnl|canFam2|chr6 (9869173-9869037) | |
| 184-312, gnl|danRer3|chr5 (61761169-61761038) | |
| 184-312, gnl|echTel1|scaffold_314928 (1496-1358) | |
| 184-312, gnl|galGal2|chr19 (180328-180194) | |
| 184-312, gnl|hg17|chr7 (71885122-71885260) | |
| 184-312, gnl|Hg17|chr7 (72187219-72187346) | |
| 184-312, gnl|loxAfr1|scaffold_25211 (39205-39070) | |
| 184-312, gnl|mm7|chr5 (134321032-134320896) | |
| 184-312, gnl|Mm7|chr5 (134321025-134320898) | |
| 184-312, gnl|monDom2|scaffold_77 (5669032-5669171) | |
| 184-312, gnl|panTro1|chr6 (75752947-75752809) | |
| 184-312, gnl|rheMac2|chr3 (50847213-50847351) | |
| 184-312, gnl|rn3|chr12 (22464864-22465000) | |
| 184-312, gnl|xenTro1|scaffold_32 (279751-279884) | |
| 402-601, gnl|bosTau2|chr25 (28268244-28268045) | |
| 402-601, gnl|canFam2|chr6 (9867816-9867563) | |
| 402-601, gnl|danRer3|chr5 (61759086-61758832) | |
| 402-601, gnl|galGal2|chr19 (178563-178329) | |
| 402-601, gnl|hg17|chr7 (71886686-71886941) | |
| 402-601, gnl|Hg17|chr7 (72188803-72189002) | |
| 402-601, gnl|loxAfr1|scaffold_25211 (37678-37424) | |
| 402-601, gnl|mm7|chr5 (134317584-134317352) | |
| 402-601, gnl|Mm7|chr5 (134317573-134317374) | |
| 402-601, gnl|monDom2|scaffold_77 (5670119-5670357) | |
| 402-601, gnl|panTro1|chr6 (75751399-75751144) | |
| 402-601, gnl|rheMac2|chr3 (50848773-50849028) | |
| 402-601, gnl|rn3|chr12 (22468269-22468512) | |
| 402-601, gnl|xenTro1|scaffold_32 (281358-281571) | |
| 725-921, gnl|bosTau2|chr25 (28261384-28261188) | |
| 725-921, gnl|Hg17|chr7 (72199290-72199486) | |
| 725-921, gnl|Mm7|chr5 (134311397-134311201) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.207814) |