Non-Coding RNA Search

Ss1.1-Mixc-0039,e10.5

Sequence:


               
               GAGCCAGGCCCGGGAGCGGCTGTGTAGGGCCGCCCAATATGCTTGCTCCCTTCTTGGCCA
TGCCCTACAGAAACATGGGGCCAGTCCTGAGTTACAGAAACAGATTCGACAGCTGGAGGG
TCATCTGAGCCTAGGAAGAAAGCTTCTACGCCTCGGTAACTCAGCAGATGCCCTTGAGTC
AGCCAAACGAGCTGTGCATCTATCAGATGTTGTCCTGAGATTCTGCATCACTGTTAGTCA
CCTTAATAGAGCTTTGTACTTCGCCTGCGATAATGTCCTGTGGGCCGGAAAGTCTGGACT
TGTTCCCCGTGTGGATCAGGAGAAGTGGGCCCAGCGTTCATTCAGGTACTATCTTTTTTC
CCTCATCATGAATTTGAGCCGTGATGCTTATGAGATTCGCCTACTGATGGAACAAGAGTC
TTCAGCTTGTAGCCGGCGACTGAAGGGTTCTGGAGGAGGAGTTCCAGGAGGAATTGAAAC
TGGGGGCCCTGGGGGTCCAGGGACTCCAGGAGGAGCCCTGCCCCAAGTGGCTCTGAAGTT
TCGGCTCCAAGTTCTGCTCCTGGCTCGGGTCCTTCGAGGTCATCCCCCTCTTCTGCTGGA
TGTGGTCAGAAATGCCTGTGATCTCTTCATTCCACTGGACAAACTAGGCCTCTGGCGCTG
TGGCCCTGGGATTGTGGGGCTTTGTGGCCTCGTGTCCTCCATCCTGTCTATTCTCACCCT
AATTTGCCCTTGGCTGCGACTCAAGCCCTGATATTCTGGTATAGGATAAAGAGGGGAACT
GAATTGATGACGTGGAATTTTAGATTGTTCCCATGTACCAGCCTAATTCTGACCCTACTC
CTTGGTTAAAGTTAAAATCCAGAGATTTTGGAGGTAGGGGGAGGAGCTTAGGGGAGATAA
GATGAGGAAAGATAACTTGTGAGTTCGATAGGTTGATTCTGACATTCAGATCTGCTGGAG
TTTTTGTTCTTTTCCTCCTTCATTGCATTGTCTTTGTCTTTCTTGACTCTTTACTGTGTC
TCTTTTAAGTCTATTTAAGATTCTGTCTCTGCATCTCTGTTTTACCTTCTCAGTCCCTTA
TCATAAGAATTTAATGAGCAACAGGATTACTTTTTGGTATGGGAGGTAGAAGGTATGGTC
TGTAAGGTTCCAACTGCCTTCTTTTTCCTCACCAAGGTGACTTGTGGCTGTTATTTTTCC
CTTTCAAACTCCAAATCACAATTTTAAAGGCTTTCTGTCCCAATGGACTCTTCCCACATG
CACCAGAGGTAGTTTCATGCTTCCTCTTCCTCTCTCATGCCTACCTCAACAACCTCCCTC
ATGATTTGCCCTTAACCTTCCCTCTCTTCACACCTGCAGATTTCTGCTTTCCCTTTGATT
TCAGGGCTTTGTTTTAGCCTTTCCTTACCCCTTCTTTGCCTATCCAGAATGATGCTGTGT
CTAGCATCTTACTGTAAATACTGTACAATGATTCTGTGTAAATAGCTGAGGCCCATGCCC
ATGATGGAAAGCAAGCCTTCCAAGTTAGCAAATTAAAGATCAGTTTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCCAGGCCCGGGAGCGGCTGTGTAGGGCCGCCCAATATGCTTGCTCCCTTCTTGGCCA
TGCCCTACAGAAACATGGGGCCAGTCCTGAGTTACAGAAACAGATTCGACAGCTGGAGGG
TCATCTGAGCCTAGGAAGAAAGCTTCTACGCCTCGGTAACTCAGCAGATGCCCTTGAGTC
AGCCAAACGAGCTGTGCATCTATCAGATGTTGTCCTGAGATTCTGCATCACTGTTAGTCA
CCTTAATAGAGCTTTGTACTTCGCCTGCGATAATGTCCTGTGGGCCGGAAAGTCTGGACT
TGTTCCCCGTGTGGATCAGGAGAAGTGGGCCCAGCGTTCATTCAGGTACTATCTTTTTTC
CCTCATCATGAATTTGAGCCGTGATGCTTATGAGATTCGCCTACTGATGGAACAAGAGTC
TTCAGCTTGTAGCCGGCGACTGAAGGGTTCTGGAGGAGGAGTTCCAGGAGGAATTGAAAC
TGGGGGCCCTGGGGGTCCAGGGACTCCAGGAGGAGCCCTGCCCCAAGTGGCTCTGAAGTT
TCGGCTCCAAGTTCTGCTCCTGGCTCGGGTCCTTCGAGGTCATCCCCCTCTTCTGCTGGA
TGTGGTCAGAAATGCCTGTGATCTCTTCATTCCACTGGACAAACTAGGCCTCTGGCGCTG
TGGCCCTGGGATTGTGGGGCTTTGTGGCCTCGTGTCCTCCATCCTGTCTATTCTCACCCT
AATTTGCCCTTGGCTGCGACTCAAGCCCTGATATTCTGGTATAGGATAAAGAGGGGAACT
GAATTGATGACGTGGAATTTTAGATTGTTCCCATGTACCAGCCTAATTCTGACCCTACTC
CTTGGTTAAAGTTAAAATCCAGAGATTTTGGAGGTAGGGGGAGGAGCTTAGGGGAGATAA
GATGAGGAAAGATAACTTGTGAGTTCGATAGGTTGATTCTGACATTCAGATCTGCTGGAG
TTTTTGTTCTTTTCCTCCTTCATTGCATTGTCTTTGTCTTTCTTGACTCTTTACTGTGTC
TCTTTTAAGTCTATTTAAGATTCTGTCTCTGCATCTCTGTTTTACCTTCTCAGTCCCTTA
TCATAAGAATTTAATGAGCAACAGGATTACTTTTTGGTATGGGAGGTAGAAGGTATGGTC
TGTAAGGTTCCAACTGCCTTCTTTTTCCTCACCAAGGTGACTTGTGGCTGTTATTTTTCC
CTTTCAAACTCCAAATCACAATTTTAAAGGCTTTCTGTCCCAATGGACTCTTCCCACATG
CACCAGAGGTAGTTTCATGCTTCCTCTTCCTCTCTCATGCCTACCTCAACAACCTCCCTC
ATGATTTGCCCTTAACCTTCCCTCTCTTCACACCTGCAGATTTCTGCTTTCCCTTTGATT
TCAGGGCTTTGTTTTAGCCTTTCCTTACCCCTTCTTTGCCTATCCAGAATGATGCTGTGT
CTAGCATCTTACTGTAAATACTGTACAATGATTCTGTGTAAATAGCTGAGGCCCATGCCC
ATGATGGAAAGCAAGCCTTCCAAGTTAGCAAATTAAAGATCAGTTTGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               PX11B_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               PX11B_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               422-581, + strand, RNAz p=0.938936

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               422-581, + strand, RNAz p=0.938936

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               26-143, gnl|bosTau2|chr3 (15435939-15436056)
               

               
               26-143, gnl|Hg17|chr1 (143006315-143006432)
               

               
               26-143, gnl|Mm7|chr3 (96510622-96510739)
               


               
               343-1548, gnl|bosTau2|chr3 (15439451-15440651)
               

               
               343-1548, gnl|Hg17|chr1 (143011556-143012767)
               

               
               343-1548, gnl|Mm7|chr3 (96517522-96518672)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               26-143, gnl|bosTau2|chr3 (15435939-15436056)
               

               
               26-143, gnl|Hg17|chr1 (143006315-143006432)
               

               
               26-143, gnl|Mm7|chr3 (96510622-96510739)
               


               
               343-1548, gnl|bosTau2|chr3 (15439451-15440651)
               

               
               343-1548, gnl|Hg17|chr1 (143011556-143012767)
               

               
               343-1548, gnl|Mm7|chr3 (96517522-96518672)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               csk (0.281492)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               nlu (0.191681)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               bla (0.124347)
               

               
               eep (0.122564)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.281492)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               nlu (0.191681)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               bla (0.124347)
               

               
               eep (0.122564)

	26-143, gnl\|bosTau2\|chr3 (15435939-15436056)
	26-143, gnl\|Hg17\|chr1 (143006315-143006432)
	26-143, gnl\|Mm7\|chr3 (96510622-96510739)

	343-1548, gnl\|bosTau2\|chr3 (15439451-15440651)
	343-1548, gnl\|Hg17\|chr1 (143011556-143012767)
	343-1548, gnl\|Mm7\|chr3 (96517522-96518672)

	csk (0.281492)
	tes (0.207814)
	hea (0.204499)
	nlu (0.191681)
	gul (0.177588)
	fty (0.17584)
	fat (0.147427)
	lin (0.145603)
	hyp (0.142837)
	bla (0.124347)
	eep (0.122564)