Non-Coding RNA Search

Ss1.1-Mixc-0039,f15.5

Sequence:


               
               GGATCCTCAGAGCCACCCCGAGGTCCAGAATGCCTCCTGGGACCTGCTGGGGGAGGCTCT
GGCCCAGCACATCCGTGAGCAGATAGACGCCCGGGGTGACCACCAGCTCAGCCACTACAG
CCTGGCTGGGTCCTGGAGCCACAGGATGGGCACAGCTCATGTGTCTGTGCTGGGGGAGGA
CGGCAGTGCTGTGTCCGCCACCAGCACCATCAACACCAGCTTTGGAGCCATGGTGTACTC
ACCTCGCACGGGCATCCTCCTCAACAATGAACTCCTGGACCTGTGCTGGAGGCACCCACG
TGGCTCTGGAATACCCCCACCACCTGTTCCAGGTGAGCGGCCGCCATCATCCATGGTCCC
CTCCATCTTGGTCAACGCAGCCCAGGGGTCAAAGCTGGTGATCGGCGGGGCCGGCGGGGA
GCTCATCATCTCTGCTGTGGCCCAGGCCATTGTGAACAAGCTGTGGCTGGGCCTTGACCT
GCAGGCCGCCATTGCGGCCCCCATCCTGCACGTGGACAGCAAGGGCCGGGTGGAATACGA
GCCCAGCTTCAGCCAGGAGGTGAAGGAGGGGCTCCAGGACCGGGGCCAGAACCAGATCAA
GAGACTCATCTTCCTGAACGTGGTCCAGGCAGTGTCCCAGGACAGGGCCTGCGTGTACGC
TGTGTCGGACCCACGGAAGCATGGGGCACCCTCGGGCTACTGAAGGAGATGCTCTGGGAC
CTGAGGTTCTGCCCACTGCCCAGGTGCACCCAGGCTGGCCAGTGCTCCAGCAGGATCTGG
ACTCTGGGGCTGGGCAGTCAGCCTGGTGCTGCAAGAGGTGGGGACAGCCCAGCAGACAGA
TGGCTGGGGGGACAGAGCCCACCCCTAGAGCCCCTTGTGGCCCTGCCCTGGCCCCTCCAG
CCTCCCCAGGCCTCTCCCCCAGGACTGTGCCCTGTCCTCTGTGGCTCATACCCCACCTGT
GTTTCCTCTAATCTGAAATTAAAGGAGAGGCTACAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATCCTCAGAGCCACCCCGAGGTCCAGAATGCCTCCTGGGACCTGCTGGGGGAGGCTCT
GGCCCAGCACATCCGTGAGCAGATAGACGCCCGGGGTGACCACCAGCTCAGCCACTACAG
CCTGGCTGGGTCCTGGAGCCACAGGATGGGCACAGCTCATGTGTCTGTGCTGGGGGAGGA
CGGCAGTGCTGTGTCCGCCACCAGCACCATCAACACCAGCTTTGGAGCCATGGTGTACTC
ACCTCGCACGGGCATCCTCCTCAACAATGAACTCCTGGACCTGTGCTGGAGGCACCCACG
TGGCTCTGGAATACCCCCACCACCTGTTCCAGGTGAGCGGCCGCCATCATCCATGGTCCC
CTCCATCTTGGTCAACGCAGCCCAGGGGTCAAAGCTGGTGATCGGCGGGGCCGGCGGGGA
GCTCATCATCTCTGCTGTGGCCCAGGCCATTGTGAACAAGCTGTGGCTGGGCCTTGACCT
GCAGGCCGCCATTGCGGCCCCCATCCTGCACGTGGACAGCAAGGGCCGGGTGGAATACGA
GCCCAGCTTCAGCCAGGAGGTGAAGGAGGGGCTCCAGGACCGGGGCCAGAACCAGATCAA
GAGACTCATCTTCCTGAACGTGGTCCAGGCAGTGTCCCAGGACAGGGCCTGCGTGTACGC
TGTGTCGGACCCACGGAAGCATGGGGCACCCTCGGGCTACTGAAGGAGATGCTCTGGGAC
CTGAGGTTCTGCCCACTGCCCAGGTGCACCCAGGCTGGCCAGTGCTCCAGCAGGATCTGG
ACTCTGGGGCTGGGCAGTCAGCCTGGTGCTGCAAGAGGTGGGGACAGCCCAGCAGACAGA
TGGCTGGGGGGACAGAGCCCACCCCTAGAGCCCCTTGTGGCCCTGCCCTGGCCCCTCCAG
CCTCCCCAGGCCTCTCCCCCAGGACTGTGCCCTGTCCTCTGTGGCTCATACCCCACCTGT
GTTTCCTCTAATCTGAAATTAAAGGAGAGGCTACAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8CE26_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8CE26_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               64-180, + strand, RNAz p=0.548548

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               64-180, + strand, RNAz p=0.548548

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               25-216, gnl|bosTau2|chr17 (44714006-44713815)
               

               
               25-216, gnl|Hg17|chr22 (22946792-22946601)
               

               
               25-216, gnl|Mm7|chr10 (75264846-75265040)
               


               
               553-995, gnl|bosTau2|chr17 (44712343-44711909)
               

               
               553-995, gnl|Hg17|chr22 (22940642-22940182)
               

               
               553-995, gnl|Mm7|chr10 (75270377-75270831)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               25-216, gnl|bosTau2|chr17 (44714006-44713815)
               

               
               25-216, gnl|Hg17|chr22 (22946792-22946601)
               

               
               25-216, gnl|Mm7|chr10 (75264846-75265040)
               


               
               553-995, gnl|bosTau2|chr17 (44712343-44711909)
               

               
               553-995, gnl|Hg17|chr22 (22940642-22940182)
               

               
               553-995, gnl|Mm7|chr10 (75270377-75270831)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               fty (0.17584)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               eje (0.0988338)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               eje (0.0988338)

	25-216, gnl\|bosTau2\|chr17 (44714006-44713815)
	25-216, gnl\|Hg17\|chr22 (22946792-22946601)
	25-216, gnl\|Mm7\|chr10 (75264846-75265040)

	553-995, gnl\|bosTau2\|chr17 (44712343-44711909)
	553-995, gnl\|Hg17\|chr22 (22940642-22940182)
	553-995, gnl\|Mm7\|chr10 (75270377-75270831)

	fty (0.17584)
	fhi (0.169578)
	nco (0.161734)
	cag (0.151194)
	cov (0.132153)
	eep (0.122564)
	eje (0.0988338)