Ss1.1-Mixc-0039,g21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCGAGGAGCTGGTCCAGACGCGATGTGAAATGGAGAAGTATCTGACACCCCAGCTTCCG CCAGTTTCCATAATTCCAGAGCATAAGAAGTATAGACGAGACAGTGCCTCAGTCGTAGAC CAGTTCTTCACTGACAGTGAAGGGTTACCTTACAGTATCAACATGAACGTCTTCCTCCCT GACATCACTCACCTGAGAACTGGCCTCTACAAATCCCAGAGACCGTGCGTAACCCACATC AAGACCGAACCTGTTACCATTTTCAGCCACCAGAGTGAAACGACGGCCCCTCCTCCGGCC CCGACCCAGGCCCTCCCCGAGTTCACCAGTATATTCAGCTCCCACCAGACCGCAGCTCCA GAGGTGAACAACATTTTCATCAAACAAGAACTTCCTACACCAGACCTTCGTCTTTCTGTC CCTCCCCAGCAGGGCCACCTGTACCAGCTGCTGAACACACCGGATCTAGATATGCCCAGT TCTACCAACCAGACAGCAGTGATGGACACTCTCAATGTTTCTATGTCAGCTGCCATGGCG GGCCTTAACACCCACACCGCCGCCGTCCCGCAGACTGCGATGAAGCAATTCCAGAGCATG CCCCCTTGCACATACACCATGCCAAGTCAGTTTCTTCCCCAGCAGGCTACTTACTTCCCC CCATCACCACCAAGCTCGGAGCCGGGAAGTCCAGATAGACAAGCAGAGATGCTCCAGAAT CTAACCCCACCTCCATCCTATGCTGCTACGATTGCTTCTAAACTGGCGATTCATAATCCA AATTTGCCCGCCACCCTGCCAGTTAATTCCCAAAACATCCAGCCTGTCAGATACAATAGG AGGAGTAACCCCGATCTGGAGAAACGACGCATCCACTACTGCGATTACCCGGGCTGCACC AAAGTTTATACAAAGTCTTCTCATTTAAAAGCTCACCTGAGGACTCATACTGGCGAGAAG CCCTACAAGTGCACCTGGGAAGGCTGCGACTGGAGGTTCGCGCGCTCGGACGAGCTGACC CGCCACTACCGCAAGCACACGGGAGCCAAGCCCTTCCAGTGCGGCGTGTGCAACCGCAGC TTCTCCCGCTCTGATCACCTCGCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCGAGGAGCTGGTCCAGACGCGATGTGAAATGGAGAAGTATCTGACACCCCAGCTTCCG CCAGTTTCCATAATTCCAGAGCATAAGAAGTATAGACGAGACAGTGCCTCAGTCGTAGAC CAGTTCTTCACTGACAGTGAAGGGTTACCTTACAGTATCAACATGAACGTCTTCCTCCCT GACATCACTCACCTGAGAACTGGCCTCTACAAATCCCAGAGACCGTGCGTAACCCACATC AAGACCGAACCTGTTACCATTTTCAGCCACCAGAGTGAAACGACGGCCCCTCCTCCGGCC CCGACCCAGGCCCTCCCCGAGTTCACCAGTATATTCAGCTCCCACCAGACCGCAGCTCCA GAGGTGAACAACATTTTCATCAAACAAGAACTTCCTACACCAGACCTTCGTCTTTCTGTC CCTCCCCAGCAGGGCCACCTGTACCAGCTGCTGAACACACCGGATCTAGATATGCCCAGT TCTACCAACCAGACAGCAGTGATGGACACTCTCAATGTTTCTATGTCAGCTGCCATGGCG GGCCTTAACACCCACACCGCCGCCGTCCCGCAGACTGCGATGAAGCAATTCCAGAGCATG CCCCCTTGCACATACACCATGCCAAGTCAGTTTCTTCCCCAGCAGGCTACTTACTTCCCC CCATCACCACCAAGCTCGGAGCCGGGAAGTCCAGATAGACAAGCAGAGATGCTCCAGAAT CTAACCCCACCTCCATCCTATGCTGCTACGATTGCTTCTAAACTGGCGATTCATAATCCA AATTTGCCCGCCACCCTGCCAGTTAATTCCCAAAACATCCAGCCTGTCAGATACAATAGG AGGAGTAACCCCGATCTGGAGAAACGACGCATCCACTACTGCGATTACCCGGGCTGCACC AAAGTTTATACAAAGTCTTCTCATTTAAAAGCTCACCTGAGGACTCATACTGGCGAGAAG CCCTACAAGTGCACCTGGGAAGGCTGCGACTGGAGGTTCGCGCGCTCGGACGAGCTGACC CGCCACTACCGCAAGCACACGGGAGCCAAGCCCTTCCAGTGCGGCGTGTGCAACCGCAGC TTCTCCCGCTCTGATCACCTCGCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 96-215, - strand, RNAz p=0.951767 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 96-215, - strand, RNAz p=0.951767 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 17-893, gnl|bosTau2|chr20 (15460395-15461271) | |
| 17-893, gnl|Hg17|chr13 (72533998-72534874) | |
| 17-893, gnl|Mm7|chr14 (93702522-93703398) | |
| 944-1103, gnl|bosTau2|chr12 (24415734-24415893) | |
| 944-1103, gnl|canFam2|chr22 (30652063-30652280) | |
| 944-1103, gnl|danRer3|chr11 (26968975-26969203) | |
| 944-1103, gnl|dasNov1|scaffold_503 (118776-118994) | |
| 944-1103, gnl|echTel1|scaffold_249317 (3855-4072) | |
| 944-1103, gnl|fr1|chrUn (148820680-148820889) | |
| 944-1103, gnl|galGal2|chr1 (152533014-152532804) | |
| 944-1103, gnl|hg17|chr13 (73167618-73167837) | |
| 944-1103, gnl|Hg17|chr13 (73167818-73167659) | |
| 944-1103, gnl|loxAfr1|scaffold_1620 (97620-97402) | |
| 944-1103, gnl|mm7|chr14 (94278735-94278953) | |
| 944-1103, gnl|Mm7|chr14 (94278934-94278775) | |
| 944-1103, gnl|monDom2|scaffold_8 (10166624-10166834) | |
| 944-1103, gnl|oryCun1|scaffold_213608 (254352-254144) | |
| 944-1103, gnl|panTro1|chr14 (55716930-55717147) | |
| 944-1103, gnl|rheMac2|chr17 (54147153-54147372) | |
| 944-1103, gnl|rn3|chr15 (83703111-83703329) | |
| 944-1103, gnl|tetNig1|chr2 (8027417-8027632) | |
| 944-1103, gnl|xenTro1|scaffold_107 (583178-582969) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 17-893, gnl|bosTau2|chr20 (15460395-15461271) | |
| 17-893, gnl|Hg17|chr13 (72533998-72534874) | |
| 17-893, gnl|Mm7|chr14 (93702522-93703398) | |
| 944-1103, gnl|bosTau2|chr12 (24415734-24415893) | |
| 944-1103, gnl|canFam2|chr22 (30652063-30652280) | |
| 944-1103, gnl|danRer3|chr11 (26968975-26969203) | |
| 944-1103, gnl|dasNov1|scaffold_503 (118776-118994) | |
| 944-1103, gnl|echTel1|scaffold_249317 (3855-4072) | |
| 944-1103, gnl|fr1|chrUn (148820680-148820889) | |
| 944-1103, gnl|galGal2|chr1 (152533014-152532804) | |
| 944-1103, gnl|hg17|chr13 (73167618-73167837) | |
| 944-1103, gnl|Hg17|chr13 (73167818-73167659) | |
| 944-1103, gnl|loxAfr1|scaffold_1620 (97620-97402) | |
| 944-1103, gnl|mm7|chr14 (94278735-94278953) | |
| 944-1103, gnl|Mm7|chr14 (94278934-94278775) | |
| 944-1103, gnl|monDom2|scaffold_8 (10166624-10166834) | |
| 944-1103, gnl|oryCun1|scaffold_213608 (254352-254144) | |
| 944-1103, gnl|panTro1|chr14 (55716930-55717147) | |
| 944-1103, gnl|rheMac2|chr17 (54147153-54147372) | |
| 944-1103, gnl|rn3|chr15 (83703111-83703329) | |
| 944-1103, gnl|tetNig1|chr2 (8027417-8027632) | |
| 944-1103, gnl|xenTro1|scaffold_107 (583178-582969) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| pla (0.401016) | |
| ton (0.1755) | |
| nco (0.161734) | |
| nmm (0.132802) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.401016) | |
| ton (0.1755) | |
| nco (0.161734) | |
| nmm (0.132802) |