Non-Coding RNA Search

Ss1.1-Mixc-0039,k05.5

Sequence:


               
               GGCAGCACTCTATTTTTAATCTGGAAACCCAAGTTCTCTTTGACTCCTCTTTTTGTTCAA
AAGCAATCTGATTGGATCACACAAGGCCACCCAACGCAACCCAGCACCGTGTTCTCTAAA
GAAGAATCAAATCCTGCCCACTTAGCTTGAGTGAGAAGATTTGACCTTCAAGATGCTATT
TGTGCCGAAGAGCCTGCTTAAAAGAGAAAGTGCCAGAAGGGAAACAGCATCCCAGACCTG
AAGTAGACCACAGGAATGTGGAAAATACATACACCCATATGTAGTGACCATATTCAATCT
GTCGTGTCCATACTGAGGGTTGAAATTTGATTAATTCTCTTTCCTGTTGTCATGAAAGTG
CACATACTGTAAATTAAAGGGAGGTGAATGAATAAATATTTTGAGTTTCCCTAGTTGTGA
AGGAAGCCGATATACTTTTCTTGCCAGGAGAATAAGGCTCAAGTTGAGATGATGTTTGGA
TCTCAAGGGGAAAAGCCATTCTCTTTTGTTTTCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAGCACTCTATTTTTAATCTGGAAACCCAAGTTCTCTTTGACTCCTCTTTTTGTTCAA
AAGCAATCTGATTGGATCACACAAGGCCACCCAACGCAACCCAGCACCGTGTTCTCTAAA
GAAGAATCAAATCCTGCCCACTTAGCTTGAGTGAGAAGATTTGACCTTCAAGATGCTATT
TGTGCCGAAGAGCCTGCTTAAAAGAGAAAGTGCCAGAAGGGAAACAGCATCCCAGACCTG
AAGTAGACCACAGGAATGTGGAAAATACATACACCCATATGTAGTGACCATATTCAATCT
GTCGTGTCCATACTGAGGGTTGAAATTTGATTAATTCTCTTTCCTGTTGTCATGAAAGTG
CACATACTGTAAATTAAAGGGAGGTGAATGAATAAATATTTTGAGTTTCCCTAGTTGTGA
AGGAAGCCGATATACTTTTCTTGCCAGGAGAATAAGGCTCAAGTTGAGATGATGTTTGGA
TCTCAAGGGGAAAAGCCATTCTCTTTTGTTTTCTTT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-451, gnl|bosTau2|chr23 (18950638-18950189)
               

               
               1-451, gnl|Hg17|chr6 (46752281-46752739)
               

               
               1-451, gnl|Mm7|chr17 (41764071-41763615)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-451, gnl|bosTau2|chr23 (18950638-18950189)
               

               
               1-451, gnl|Hg17|chr6 (46752281-46752739)
               

               
               1-451, gnl|Mm7|chr17 (41764071-41763615)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fli (0.202881)
               

               
               cli (0.152812)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fli (0.202881)
               

               
               cli (0.152812)

	1-451, gnl\|bosTau2\|chr23 (18950638-18950189)
	1-451, gnl\|Hg17\|chr6 (46752281-46752739)
	1-451, gnl\|Mm7\|chr17 (41764071-41763615)