Non-Coding RNA Search

Ss1.1-Mixc-0040,a10.5

Sequence:


               
               AGGCCAACATCCATCTGCTGGTTTGCAATTACGAGCCCCCGGGGAATATGAAGGGGCAGA
GGCCCTACCAGGAGGGGACTCCATGCTCCCAATGTCCTTCGGGCTACCGCTGCGAGAACT
CTCTGTGTGAACCCATCAGAGGCCCGGAAGAGTCTCAGCATTTGCCTTACTTGGTATATG
AGGCCCCATCTTCCCTGACAACAGAAGCCTCAGGCTCTAGGGAAAAGGGCACCACTTCAT
CCCTAGCAATGGAAACTCCATCCTTGGTAAAAGAGGTCTCAGGATCCCTGGCAACAGAGG
CTCTACCTGCTGTAGAAACCAAGGCCCCATCTTCCTTAGTAACAGAAGATTCCCCTTCCA
TGGCAACGGAGGCTCCACCTTCCCTAACAACCGAGGCCCCTTTCTTTTTGGCAACTCACA
ACCTGCTCTCCTTGGATGAGAGGTCAGCTACTTTCCCCAAATCGACCCAGGACCCCACCC
CCAAGTCGGCAGACCAAGAGGCCAGCAGTACAAGAATGCCCTCGAGGAGCCCAGAGAGTT
CTCTGCACCCCAAGACATCCTTTACAGGGACACAGGAGCCACTACACCCCTCCCAAGAGG
GTGAGGCTGAGGCCGAGTCACCTGATTCCAGTGAGATCTTGGCCTCAGTTTTTCTAGCCC
AGGACCAGGCAGGGGAGCCACAGGCTACCCTGGAGCACAAGGGGCACACCTCCTCCAAGC
CCTTGTCCAACTCCCCCGCTGCCTCCGCTACTGCTAAGGCCACGGGCGGGCGTACCCTGG
CCCTGCAGTCCTCCTTGCCAGGTGCAGAGGACCCTGAAAGGCCTGGCATCGAGTCAGGGT
TGAACTCAAGCCCTAGGCACATCGGGGGCCTCTTCCTGGGACTGCTGCTACTGCCTGCCC
TGGTGTTGGCTGGAATCTTCTGAAGGGGTCACCACTCAAAGGAACCGCCAGACTACTTTT
CCAGAGTGGCTGCACCATTTTACACCAGCAATGTACAAGAGTTTCAATTTCTCCACATTT
CCAACACTTGTTATAACTTTTTTGATTATAGCCATCCTACTGTGTGTGAAGTAGTAACTC
ATTGTGGTTTTGATTTTCATTTTCCTGATGACTAATGATGTTGAGCATCCTTCCATGTAT
TTGGTGCCCATCTGTATATCTTCTTTGGAGAAACGTCTACTCAAGTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGCCAACATCCATCTGCTGGTTTGCAATTACGAGCCCCCGGGGAATATGAAGGGGCAGA
GGCCCTACCAGGAGGGGACTCCATGCTCCCAATGTCCTTCGGGCTACCGCTGCGAGAACT
CTCTGTGTGAACCCATCAGAGGCCCGGAAGAGTCTCAGCATTTGCCTTACTTGGTATATG
AGGCCCCATCTTCCCTGACAACAGAAGCCTCAGGCTCTAGGGAAAAGGGCACCACTTCAT
CCCTAGCAATGGAAACTCCATCCTTGGTAAAAGAGGTCTCAGGATCCCTGGCAACAGAGG
CTCTACCTGCTGTAGAAACCAAGGCCCCATCTTCCTTAGTAACAGAAGATTCCCCTTCCA
TGGCAACGGAGGCTCCACCTTCCCTAACAACCGAGGCCCCTTTCTTTTTGGCAACTCACA
ACCTGCTCTCCTTGGATGAGAGGTCAGCTACTTTCCCCAAATCGACCCAGGACCCCACCC
CCAAGTCGGCAGACCAAGAGGCCAGCAGTACAAGAATGCCCTCGAGGAGCCCAGAGAGTT
CTCTGCACCCCAAGACATCCTTTACAGGGACACAGGAGCCACTACACCCCTCCCAAGAGG
GTGAGGCTGAGGCCGAGTCACCTGATTCCAGTGAGATCTTGGCCTCAGTTTTTCTAGCCC
AGGACCAGGCAGGGGAGCCACAGGCTACCCTGGAGCACAAGGGGCACACCTCCTCCAAGC
CCTTGTCCAACTCCCCCGCTGCCTCCGCTACTGCTAAGGCCACGGGCGGGCGTACCCTGG
CCCTGCAGTCCTCCTTGCCAGGTGCAGAGGACCCTGAAAGGCCTGGCATCGAGTCAGGGT
TGAACTCAAGCCCTAGGCACATCGGGGGCCTCTTCCTGGGACTGCTGCTACTGCCTGCCC
TGGTGTTGGCTGGAATCTTCTGAAGGGGTCACCACTCAAAGGAACCGCCAGACTACTTTT
CCAGAGTGGCTGCACCATTTTACACCAGCAATGTACAAGAGTTTCAATTTCTCCACATTT
CCAACACTTGTTATAACTTTTTTGATTATAGCCATCCTACTGTGTGTGAAGTAGTAACTC
ATTGTGGTTTTGATTTTCATTTTCCTGATGACTAATGATGTTGAGCATCCTTCCATGTAT
TTGGTGCCCATCTGTATATCTTCTTTGGAGAAACGTCTACTCAAGTCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61811443|ref|XP_583608.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61811443|ref|XP_583608.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               471-627, - strand, RNAz p=0.994136

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               471-627, - strand, RNAz p=0.994136

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               119-803, gnl|bosTau2|chr23 (10161367-10162061)
               

               
               119-803, gnl|Hg17|chr6 (37038677-37039368)
               

               
               119-803, gnl|Mm7|chr17 (27518931-27519726)
               


               
               939-1188, gnl|bosTau2|chr10 (19559718-19559972)
               


               
               948-1183, gnl|bosTau2|chr10 (69985687-69985440)
               

               
               948-1183, gnl|Mm7|chr11 (43332822-43333221)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               119-803, gnl|bosTau2|chr23 (10161367-10162061)
               

               
               119-803, gnl|Hg17|chr6 (37038677-37039368)
               

               
               119-803, gnl|Mm7|chr17 (27518931-27519726)
               


               
               939-1188, gnl|bosTau2|chr10 (19559718-19559972)
               


               
               948-1183, gnl|bosTau2|chr10 (69985687-69985440)
               

               
               948-1183, gnl|Mm7|chr11 (43332822-43333221)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               mas (0.630915)
               

               
               nlu (0.383362)
               

               
               tbr (0.308356)
               

               
               bla (0.248694)
               

               
               cly (0.241284)
               

               
               jca (0.22792)
               

               
               hea (0.204499)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               med (0.116252)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.630915)
               

               
               nlu (0.383362)
               

               
               tbr (0.308356)
               

               
               bla (0.248694)
               

               
               cly (0.241284)
               

               
               jca (0.22792)
               

               
               hea (0.204499)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               med (0.116252)

	119-803, gnl\|bosTau2\|chr23 (10161367-10162061)
	119-803, gnl\|Hg17\|chr6 (37038677-37039368)
	119-803, gnl\|Mm7\|chr17 (27518931-27519726)

	939-1188, gnl\|bosTau2\|chr10 (19559718-19559972)

	948-1183, gnl\|bosTau2\|chr10 (69985687-69985440)
	948-1183, gnl\|Mm7\|chr11 (43332822-43333221)

	mas (0.630915)
	nlu (0.383362)
	tbr (0.308356)
	bla (0.248694)
	cly (0.241284)
	jca (0.22792)
	hea (0.204499)
	lin (0.145603)
	csk (0.140746)
	cst (0.140036)
	che (0.136314)
	med (0.116252)