Ss1.1-Mixc-0040,b09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCTACAGGTCGCGCCCCTCAATCTACTCCCTTTCTTATACCAAGAGGGGAAAAACACGG AACTACCTCTACCCGATCTGGTCACCATACGCCTATTATCTTTACTGTTACAAATACCGG ATCACCCTCCGGGAGAAGATGCTGCCTTGTTATAAAAGCATCACTTATAAAGAACAGGAG GACTTGACACTCCGGCCCCGTTGCTGCCTTCAGTGCTCCTGAGTCCCTAGTAGGCCCTCA GGGGGGCAGAAGCACCGAGCAGGGTGACTGCAACCAGCTTAAAGAATTGTATTCGGCTGG GAACCTGACGGTGCTGGCTACTGACCCCCTGCTTCACCAGGACCCCGTGCAGTTAGACTT CCACTTCCGCCTCAGCCCCCAGACCTCTGCACATTGGCACGGACTTCTTAGTGACCAGAG ACTCTTCCTGGATATCCCATATCGAGCTCTGGATCAAGGCAACCGGGAAAGTTTAACTGC AACACTGGAGTATGTAGAGGAGAAGACCAATGTGGACTCCGTGTTTGTGAATTTCCAAAA CAACCGGAATGACAGAGGTGACTTGCTACGGGCCTTCAGCTACATGGGCTTTGAGGTGGT CAGACCAGATCACCCAGCCCTTCCTCCCTGGGACAATGTCATCTTTATGGTGTATCCCCT TGAAAGGGACCCTGGTCACCTGCCCAGTGAGCCTCCCTGAAGCGGCTTATCGCTACCCTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCTACAGGTCGCGCCCCTCAATCTACTCCCTTTCTTATACCAAGAGGGGAAAAACACGG AACTACCTCTACCCGATCTGGTCACCATACGCCTATTATCTTTACTGTTACAAATACCGG ATCACCCTCCGGGAGAAGATGCTGCCTTGTTATAAAAGCATCACTTATAAAGAACAGGAG GACTTGACACTCCGGCCCCGTTGCTGCCTTCAGTGCTCCTGAGTCCCTAGTAGGCCCTCA GGGGGGCAGAAGCACCGAGCAGGGTGACTGCAACCAGCTTAAAGAATTGTATTCGGCTGG GAACCTGACGGTGCTGGCTACTGACCCCCTGCTTCACCAGGACCCCGTGCAGTTAGACTT CCACTTCCGCCTCAGCCCCCAGACCTCTGCACATTGGCACGGACTTCTTAGTGACCAGAG ACTCTTCCTGGATATCCCATATCGAGCTCTGGATCAAGGCAACCGGGAAAGTTTAACTGC AACACTGGAGTATGTAGAGGAGAAGACCAATGTGGACTCCGTGTTTGTGAATTTCCAAAA CAACCGGAATGACAGAGGTGACTTGCTACGGGCCTTCAGCTACATGGGCTTTGAGGTGGT CAGACCAGATCACCCAGCCCTTCCTCCCTGGGACAATGTCATCTTTATGGTGTATCCCCT TGAAAGGGACCCTGGTCACCTGCCCAGTGAGCCTCCCTGAAGCGGCTTATCGCTACCCTA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1-119, - strand, RNAz p=0.752968 | |
| 553-687, - strand, RNAz p=0.915535 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-119, - strand, RNAz p=0.752968 | |
| 553-687, - strand, RNAz p=0.915535 |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 1-158, gnl|bosTau2|chr3 (15073707-15073550) | |
| 1-158, gnl|canFam2|chr17 (63867065-63867691) | |
| 1-158, gnl|dasNov1|scaffold_3934 (46135-46751) | |
| 1-158, gnl|hg17|chr1 (148552092-148552706) | |
| 1-158, gnl|Hg17|chr1 (148552277-148552437) | |
| 1-158, gnl|loxAfr1|scaffold_2110 (40142-40752) | |
| 1-158, gnl|mm7|chr3 (94310658-94310082) | |
| 1-158, gnl|Mm7|chr3 (94310497-94310337) | |
| 1-158, gnl|monDom2|scaffold_44 (5061270-5061933) | |
| 1-158, gnl|oryCun1|scaffold_212154 (34522-35114) | |
| 1-158, gnl|panTro1|chr1 (130305358-130305972) | |
| 1-158, gnl|rheMac2|chr1 (130216176-130216799) | |
| 1-158, gnl|rn3|chr2 (189361762-189361174) | |
| 295-479, gnl|bosTau2|chr3 (15072387-15072204) | |
| 295-479, gnl|canFam2|chr17 (63868529-63868717) | |
| 295-479, gnl|dasNov1|scaffold_3934 (47716-47911) | |
| 295-479, gnl|echTel1|scaffold_103696 (2980-2806) | |
| 295-479, gnl|hg17|chr1 (148553591-148553781) | |
| 295-479, gnl|Hg17|chr1 (148553606-148553789) | |
| 295-479, gnl|loxAfr1|scaffold_2110 (42076-42271) | |
| 295-479, gnl|mm7|chr3 (94309113-94308923) | |
| 295-479, gnl|Mm7|chr3 (94309096-94308915) | |
| 295-479, gnl|monDom2|scaffold_44 (5062804-5062994) | |
| 295-479, gnl|oryCun1|scaffold_212154 (35979-36169) | |
| 295-479, gnl|panTro1|chr1 (130306856-130307046) | |
| 295-479, gnl|rheMac2|chr1 (130217664-130217854) | |
| 295-479, gnl|rn3|chr2 (189360404-189360214) | |
| 553-719, gnl|bosTau2|chr3 (15070934-15070768) | |
| 553-719, gnl|canFam2|chr17 (63870377-63870511) | |
| 553-719, gnl|dasNov1|scaffold_3934 (49244-49379) | |
| 553-719, gnl|echTel1|scaffold_46097 (1236-1375) | |
| 553-719, gnl|hg17|chr1 (148556600-148556738) | |
| 553-719, gnl|Hg17|chr1 (148556621-148556787) | |
| 553-719, gnl|loxAfr1|scaffold_2110 (43555-43696) | |
| 553-719, gnl|mm7|chr3 (94307617-94307479) | |
| 553-719, gnl|Mm7|chr3 (94307594-94307431) | |
| 553-719, gnl|monDom2|scaffold_44 (5063805-5063942) | |
| 553-719, gnl|oryCun1|scaffold_212154 (37308-37446) | |
| 553-719, gnl|panTro1|chr1 (130309949-130310087) | |
| 553-719, gnl|rheMac2|chr1 (130219209-130219347) | |
| 553-719, gnl|rn3|chr2 (189358953-189358815) | |
| 553-719, gnl|tetNig1|chrUn_random (42513489-42513613) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-158, gnl|bosTau2|chr3 (15073707-15073550) | |
| 1-158, gnl|canFam2|chr17 (63867065-63867691) | |
| 1-158, gnl|dasNov1|scaffold_3934 (46135-46751) | |
| 1-158, gnl|hg17|chr1 (148552092-148552706) | |
| 1-158, gnl|Hg17|chr1 (148552277-148552437) | |
| 1-158, gnl|loxAfr1|scaffold_2110 (40142-40752) | |
| 1-158, gnl|mm7|chr3 (94310658-94310082) | |
| 1-158, gnl|Mm7|chr3 (94310497-94310337) | |
| 1-158, gnl|monDom2|scaffold_44 (5061270-5061933) | |
| 1-158, gnl|oryCun1|scaffold_212154 (34522-35114) | |
| 1-158, gnl|panTro1|chr1 (130305358-130305972) | |
| 1-158, gnl|rheMac2|chr1 (130216176-130216799) | |
| 1-158, gnl|rn3|chr2 (189361762-189361174) | |
| 295-479, gnl|bosTau2|chr3 (15072387-15072204) | |
| 295-479, gnl|canFam2|chr17 (63868529-63868717) | |
| 295-479, gnl|dasNov1|scaffold_3934 (47716-47911) | |
| 295-479, gnl|echTel1|scaffold_103696 (2980-2806) | |
| 295-479, gnl|hg17|chr1 (148553591-148553781) | |
| 295-479, gnl|Hg17|chr1 (148553606-148553789) | |
| 295-479, gnl|loxAfr1|scaffold_2110 (42076-42271) | |
| 295-479, gnl|mm7|chr3 (94309113-94308923) | |
| 295-479, gnl|Mm7|chr3 (94309096-94308915) | |
| 295-479, gnl|monDom2|scaffold_44 (5062804-5062994) | |
| 295-479, gnl|oryCun1|scaffold_212154 (35979-36169) | |
| 295-479, gnl|panTro1|chr1 (130306856-130307046) | |
| 295-479, gnl|rheMac2|chr1 (130217664-130217854) | |
| 295-479, gnl|rn3|chr2 (189360404-189360214) | |
| 553-719, gnl|bosTau2|chr3 (15070934-15070768) | |
| 553-719, gnl|canFam2|chr17 (63870377-63870511) | |
| 553-719, gnl|dasNov1|scaffold_3934 (49244-49379) | |
| 553-719, gnl|echTel1|scaffold_46097 (1236-1375) | |
| 553-719, gnl|hg17|chr1 (148556600-148556738) | |
| 553-719, gnl|Hg17|chr1 (148556621-148556787) | |
| 553-719, gnl|loxAfr1|scaffold_2110 (43555-43696) | |
| 553-719, gnl|mm7|chr3 (94307617-94307479) | |
| 553-719, gnl|Mm7|chr3 (94307594-94307431) | |
| 553-719, gnl|monDom2|scaffold_44 (5063805-5063942) | |
| 553-719, gnl|oryCun1|scaffold_212154 (37308-37446) | |
| 553-719, gnl|panTro1|chr1 (130309949-130310087) | |
| 553-719, gnl|rheMac2|chr1 (130219209-130219347) | |
| 553-719, gnl|rn3|chr2 (189358953-189358815) | |
| 553-719, gnl|tetNig1|chrUn_random (42513489-42513613) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.207814) | |
| col (0.195008) | |
| pty (0.142714) |