Non-Coding RNA Search

Ss1.1-Mixc-0040,i17.5

Sequence:


               
               AGCGCCGCCCGTGTGCCCCCAGTGCCCAGTAGTCCTCCTACCCCTGCATCATCTGTCACA
GCTGGTTCCTTCCGCTCCCACTCATCAGCCTCTACCTGCCCTGAGCAGATGGACTGTTCC
CCCCCTGCCAGCGCTGGTGCCAGCCCCACGTCCCCCGCCGGGGGTAGCCCCACTTCTCGC
TCCCGCAAACCTGGAGCAGTCATCGAGAGCTTCGTGAACCATGCCCCGGGGGTCTTCTCA
GGGACCTTCTCTGGCACGCTGCACCCCAACTGTCAGGACAGCAGCGGGCGGCCGAGGCGA
GACATCGGCACCATCCTGCAGATCCTCAACGACCTCCTGAGTGCCACTCGGCACTACCAG
GGCATGCCCCCATCGCTGACCCAGCTGCGCTGCCATGCCCAGTGCACCCCCGCCTCGCCC
GCCCCGGACCTTGCCCCTAAAACTACCTCCTGCGAGAAGCTAGCGGCCGCAGCCCCAGCC
TCACTGAGCCAGGCCCGCTTGTGCAAGCCCCCCGGGGACCGGCTGCGGCAGACGGAAAAC
CGTGCAACCCGCTGTAAGGTGGAGCGCTTGCAGCTGCTGCTTCAGCAGAAACGGCTCCGC
AGAAAGGCACGGCGCGATGCCCGGGGCCCCTACCACTGGCCACCCAGCCGCAAGGCCGGC
CGCAGCGATAGCAGCAGCAGCGGGGGAGGCGGCAGCCCCAGTGAGGCCTCTGGCTTGGGC
CTCGACTTTGAGGACTCCGTCTGGAAGCCAGAAGTGAACCCCGACATCAAGTCAGAGTTC
GTGGTGGCCTAGGAACCCTGTCCCTTGCCCCAGCCCAGGGTGGCCGTGAGCTTGGCCCGC
ACAGGAGGGCCGGTGGTCAGTCGGTGCAGTGGGAGGCTCCCCATTCCTGGTTCAGCATCC
TTCTGGTGGTTTTTTTGTTTTGTTTTGTTTTTTTTCCAATTCCCACCATGGTTTTCCGAA
CTCTCCATGGACTTGGGTTCCTGCCTCCTTGGCTCGGCTCACACTCCCGCCCCTTCCTCC
ATCTCCCATCCCCATGGGCGACCTGCGCTGGGTCCCTCCCGCCCACCTTCCCAAGCTCCA
AATATGTAGCAGTCTTTCCAGATGGTTGATAGCGGAGACGAGGAAGCCGCCCCCCCTTCC
GTTCTGCCGCCCTCCCCACCCTTTTCAGGTTTAAGTCGAAAATGTAGATGCCTCATTATG
CACTTTACAGACAGGGGAGGGGGCCTAGGAGAGGAGAGCCCCCCCACCCACCAACTCTGG
CTCTAAAACCACATGGCAAGGAGCTGCGGGCAGGTGCACTGCGACCCATGGTGACTGCTT
CTCTTCCACATCCCACATCCCGTACTTGTTTCTCTTCCTCTTCTCCTTTTCCTTTTTCCT
GGAAAAGAAAAGCTGTTTCAGGGCAGAGGCTGGCCAGAGCCTGCCTTGGGGTGCGGGCTG
GGGTGTGGGACCCTTTCCTGCCAGGAAAGGAAAGGGAGGGAGGGGAACATCCCGCCACCA
GCCTTCAGCGTCCACGCACTGTGCCATTTCCTCCAACGCCACCCTCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCGCCGCCCGTGTGCCCCCAGTGCCCAGTAGTCCTCCTACCCCTGCATCATCTGTCACA
GCTGGTTCCTTCCGCTCCCACTCATCAGCCTCTACCTGCCCTGAGCAGATGGACTGTTCC
CCCCCTGCCAGCGCTGGTGCCAGCCCCACGTCCCCCGCCGGGGGTAGCCCCACTTCTCGC
TCCCGCAAACCTGGAGCAGTCATCGAGAGCTTCGTGAACCATGCCCCGGGGGTCTTCTCA
GGGACCTTCTCTGGCACGCTGCACCCCAACTGTCAGGACAGCAGCGGGCGGCCGAGGCGA
GACATCGGCACCATCCTGCAGATCCTCAACGACCTCCTGAGTGCCACTCGGCACTACCAG
GGCATGCCCCCATCGCTGACCCAGCTGCGCTGCCATGCCCAGTGCACCCCCGCCTCGCCC
GCCCCGGACCTTGCCCCTAAAACTACCTCCTGCGAGAAGCTAGCGGCCGCAGCCCCAGCC
TCACTGAGCCAGGCCCGCTTGTGCAAGCCCCCCGGGGACCGGCTGCGGCAGACGGAAAAC
CGTGCAACCCGCTGTAAGGTGGAGCGCTTGCAGCTGCTGCTTCAGCAGAAACGGCTCCGC
AGAAAGGCACGGCGCGATGCCCGGGGCCCCTACCACTGGCCACCCAGCCGCAAGGCCGGC
CGCAGCGATAGCAGCAGCAGCGGGGGAGGCGGCAGCCCCAGTGAGGCCTCTGGCTTGGGC
CTCGACTTTGAGGACTCCGTCTGGAAGCCAGAAGTGAACCCCGACATCAAGTCAGAGTTC
GTGGTGGCCTAGGAACCCTGTCCCTTGCCCCAGCCCAGGGTGGCCGTGAGCTTGGCCCGC
ACAGGAGGGCCGGTGGTCAGTCGGTGCAGTGGGAGGCTCCCCATTCCTGGTTCAGCATCC
TTCTGGTGGTTTTTTTGTTTTGTTTTGTTTTTTTTCCAATTCCCACCATGGTTTTCCGAA
CTCTCCATGGACTTGGGTTCCTGCCTCCTTGGCTCGGCTCACACTCCCGCCCCTTCCTCC
ATCTCCCATCCCCATGGGCGACCTGCGCTGGGTCCCTCCCGCCCACCTTCCCAAGCTCCA
AATATGTAGCAGTCTTTCCAGATGGTTGATAGCGGAGACGAGGAAGCCGCCCCCCCTTCC
GTTCTGCCGCCCTCCCCACCCTTTTCAGGTTTAAGTCGAAAATGTAGATGCCTCATTATG
CACTTTACAGACAGGGGAGGGGGCCTAGGAGAGGAGAGCCCCCCCACCCACCAACTCTGG
CTCTAAAACCACATGGCAAGGAGCTGCGGGCAGGTGCACTGCGACCCATGGTGACTGCTT
CTCTTCCACATCCCACATCCCGTACTTGTTTCTCTTCCTCTTCTCCTTTTCCTTTTTCCT
GGAAAAGAAAAGCTGTTTCAGGGCAGAGGCTGGCCAGAGCCTGCCTTGGGGTGCGGGCTG
GGGTGTGGGACCCTTTCCTGCCAGGAAAGGAAAGGGAGGGAGGGGAACATCCCGCCACCA
GCCTTCAGCGTCCACGCACTGTGCCATTTCCTCCAACGCCACCCTCCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q96BW8_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q96BW8_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               673-854, - strand, RNAz p=0.874971

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               673-854, - strand, RNAz p=0.874971

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               81-254, gnl|bosTau2|chr7 (29194526-29194353)
               

               
               81-254, gnl|Hg17|chr19 (1205876-1206061)
               

               
               81-254, gnl|Mm7|chr10 (79936603-79936768)
               


               
               514-965, gnl|bosTau2|chr7 (29193219-29192761)
               

               
               514-965, gnl|Hg17|chr19 (1207993-1208466)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               81-254, gnl|bosTau2|chr7 (29194526-29194353)
               

               
               81-254, gnl|Hg17|chr19 (1205876-1206061)
               

               
               81-254, gnl|Mm7|chr10 (79936603-79936768)
               


               
               514-965, gnl|bosTau2|chr7 (29193219-29192761)
               

               
               514-965, gnl|Hg17|chr19 (1207993-1208466)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	81-254, gnl\|bosTau2\|chr7 (29194526-29194353)
	81-254, gnl\|Hg17\|chr19 (1205876-1206061)
	81-254, gnl\|Mm7\|chr10 (79936603-79936768)

	514-965, gnl\|bosTau2\|chr7 (29193219-29192761)
	514-965, gnl\|Hg17\|chr19 (1207993-1208466)