Non-Coding RNA Search

Ss1.1-Mixc-0040,j05.5

Sequence:


               
               GATATCCTGTTAGTGGATCTAAACTCTGAAATCGACACCAATCAGAATTCTTTACAAGAA
AATCTATTCTTAACAAATGGCATCACCTCCTGTTCTCTTCCTCGACCAAAGCCTCAGGCG
TCTTTCTTGCCTGAAAATGCCTTTTCTGCCAATCTCAACTTCTTTCCCACCCCTAATCCT
GATCCTTTCCGTGACGATCCTTTTGCACAGCCAGACCAATCGACACCCTCTTCGTCCGAT
TCTCTCAAATCTTCAGATCAGAAGAAAGAGAATTTGAGTAGCTCGGCCACCCCTCTGAGT
AATGGGCCCCTGAACGGGGATGTTGATTACTTTGGGCAGCAATTTGACCAGATCTCTAAC
CGGACTGGCAAACAGGAAGCGCAGGCAGGCCCGTGGCCCTTATCAAGTCCGCAAACACAG
CCAGCAGTGAGAACTCACAATGGGGTGTCTGAAAGAGAACAGAACGGCCTCCATACCAAA
TCCTCCCCGAACCCTTTTGTGGGAAGCCCTCCCCAAGGACTGTCCGTCCCGAATGGCGTA
AAGCAGGACTTGGAAAGCTCTGTCCAGTCCTCACCACATGACTCCATAGCCATTATCCCA
CCTCCACAAAGTACCAAAACAGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATATCCTGTTAGTGGATCTAAACTCTGAAATCGACACCAATCAGAATTCTTTACAAGAA
AATCTATTCTTAACAAATGGCATCACCTCCTGTTCTCTTCCTCGACCAAAGCCTCAGGCG
TCTTTCTTGCCTGAAAATGCCTTTTCTGCCAATCTCAACTTCTTTCCCACCCCTAATCCT
GATCCTTTCCGTGACGATCCTTTTGCACAGCCAGACCAATCGACACCCTCTTCGTCCGAT
TCTCTCAAATCTTCAGATCAGAAGAAAGAGAATTTGAGTAGCTCGGCCACCCCTCTGAGT
AATGGGCCCCTGAACGGGGATGTTGATTACTTTGGGCAGCAATTTGACCAGATCTCTAAC
CGGACTGGCAAACAGGAAGCGCAGGCAGGCCCGTGGCCCTTATCAAGTCCGCAAACACAG
CCAGCAGTGAGAACTCACAATGGGGTGTCTGAAAGAGAACAGAACGGCCTCCATACCAAA
TCCTCCCCGAACCCTTTTGTGGGAAGCCCTCCCCAAGGACTGTCCGTCCCGAATGGCGTA
AAGCAGGACTTGGAAAGCTCTGTCCAGTCCTCACCACATGACTCCATAGCCATTATCCCA
CCTCCACAAAGTACCAAAACAGGA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               40-359, - strand, RNAz p=0.995668
               

               
               480-599, - strand, RNAz p=0.636299

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-359, - strand, RNAz p=0.995668
               

               
               480-599, - strand, RNAz p=0.636299

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               40-359, BW955285 full-length enriched swine cDNA library, adult alveolar 
(dbj|BW955285.1|), blast E-value=0, identity=100% 
               

               
               40-359, 1258353 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN517750.1|), 
blast E-value=0, identity=96.88% 
               

               
               40-359, 1263229 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN520474.1|), 
blast E-value=0, identity=96.88% 
               

               
               40-359, 1270589 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN525912.1|), 
blast E-value=0, identity=96.88% 
               

               
               40-359, LB0178.CR_I17 GC_BGC-17 Bos taurus cDNA clone IMAGE (gb|DV821200.1|), 
blast E-value=0, identity=96.88% 
               

               
               40-359, LB029108.CR_K15 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE368821.1|), 
blast E-value=0, identity=96.88%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               40-359, BW955285 full-length enriched swine cDNA library, adult alveolar 
(dbj|BW955285.1|), blast E-value=0, identity=100% 
               

               
               40-359, 1258353 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN517750.1|), 
blast E-value=0, identity=96.88% 
               

               
               40-359, 1263229 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN520474.1|), 
blast E-value=0, identity=96.88% 
               

               
               40-359, 1270589 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN525912.1|), 
blast E-value=0, identity=96.88% 
               

               
               40-359, LB0178.CR_I17 GC_BGC-17 Bos taurus cDNA clone IMAGE (gb|DV821200.1|), 
blast E-value=0, identity=96.88% 
               

               
               40-359, LB029108.CR_K15 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE368821.1|), 
blast E-value=0, identity=96.88%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-624, gnl|bosTau2|chr20 (21505430-21504807)
               

               
               1-624, gnl|Hg17|chr5 (39419121-39418498)
               

               
               1-624, gnl|Mm7|chr15 (6256297-6256920)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-624, gnl|bosTau2|chr20 (21505430-21504807)
               

               
               1-624, gnl|Hg17|chr5 (39419121-39418498)
               

               
               1-624, gnl|Mm7|chr15 (6256297-6256920)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	40-359, - strand, RNAz p=0.995668
	480-599, - strand, RNAz p=0.636299

	40-359, BW955285 full-length enriched swine cDNA library, adult alveolar (dbj\|BW955285.1\|), blast E-value=0, identity=100%
	40-359, 1258353 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DN517750.1\|), blast E-value=0, identity=96.88%
	40-359, 1263229 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DN520474.1\|), blast E-value=0, identity=96.88%
	40-359, 1270589 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DN525912.1\|), blast E-value=0, identity=96.88%
	40-359, LB0178.CR_I17 GC_BGC-17 Bos taurus cDNA clone IMAGE (gb\|DV821200.1\|), blast E-value=0, identity=96.88%
	40-359, LB029108.CR_K15 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb\|EE368821.1\|), blast E-value=0, identity=96.88%

	1-624, gnl\|bosTau2\|chr20 (21505430-21504807)
	1-624, gnl\|Hg17\|chr5 (39419121-39418498)
	1-624, gnl\|Mm7\|chr15 (6256297-6256920)