Non-Coding RNA Search

Ss1.1-Mixc-0041,g07.5

Sequence:


               
               TTCGGGGACTGGAAGCCTATCCTCAAAGCACAATGACGACCACAGGCCGAGTTCTTTCCC
TGAAGCAAAGCCCCTGGCTTTGTTGTTTGGGAAATGGTTTTTGAATTCCTAAGAGGACTG
GCTTTTCTCTTGGGGGCAAATCCATAGCAAGTGACCACCGGGCGGAAGTGCAGGGAAGAC
GCTACTGGCTTCCTGGGGGCGGAGATGAGCCTGTCACTTCCTTCATTCCAACGCCCCTCC
CGCCAGCAGGTGGGGGGGACCTGACATCATTCCAGGGCCTTCGGCCCACTGGACACAGGA
TTTCCAAAGCAGCCTTGGGAGCGAGAGGCGCTTTCGCGACCGTAGGATGCGTGAAGATTC
CTTTTTAAAAGAGAAAAACCCACACCCGCCATGAAGGAGGGAACGACCTGAGATGTTCGG
AGAAGGGGCTCGGCCCCGCGTCTGCGCATGAAGGGTTTTTGGAATGAAATGCCTCTGCGT
TTTCAGGAAAAAATCTCTGATCAGCAGACCTCGAATGGATGTCCGTTCCTCCGGATTCTC
TTTTCTCTTTTGTGATCACGAGCCTTCAGAACTGTGAATGTACAGAGCTTGGACTTGAAC
CCTTTGTGGGTCGAGGAGCCGAGGGGGGGGGGGGGCATCGCCTGCAGGGCCCTGGGGGGG
CGCCTCGAAAGGAGCCTTGTCTTCTCGATGGAATGAATAAAACGTGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCGGGGACTGGAAGCCTATCCTCAAAGCACAATGACGACCACAGGCCGAGTTCTTTCCC
TGAAGCAAAGCCCCTGGCTTTGTTGTTTGGGAAATGGTTTTTGAATTCCTAAGAGGACTG
GCTTTTCTCTTGGGGGCAAATCCATAGCAAGTGACCACCGGGCGGAAGTGCAGGGAAGAC
GCTACTGGCTTCCTGGGGGCGGAGATGAGCCTGTCACTTCCTTCATTCCAACGCCCCTCC
CGCCAGCAGGTGGGGGGGACCTGACATCATTCCAGGGCCTTCGGCCCACTGGACACAGGA
TTTCCAAAGCAGCCTTGGGAGCGAGAGGCGCTTTCGCGACCGTAGGATGCGTGAAGATTC
CTTTTTAAAAGAGAAAAACCCACACCCGCCATGAAGGAGGGAACGACCTGAGATGTTCGG
AGAAGGGGCTCGGCCCCGCGTCTGCGCATGAAGGGTTTTTGGAATGAAATGCCTCTGCGT
TTTCAGGAAAAAATCTCTGATCAGCAGACCTCGAATGGATGTCCGTTCCTCCGGATTCTC
TTTTCTCTTTTGTGATCACGAGCCTTCAGAACTGTGAATGTACAGAGCTTGGACTTGAAC
CCTTTGTGGGTCGAGGAGCCGAGGGGGGGGGGGGGCATCGCCTGCAGGGCCCTGGGGGGG
CGCCTCGAAAGGAGCCTTGTCTTCTCGATGGAATGAATAAAACGTGGA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               214-652, gnl|bosTau2|chr20 (42556655-42557110)
               

               
               214-652, gnl|Hg17|chr5 (1515183-1514643)
               

               
               214-652, gnl|Mm7|chr13 (70447451-70447855)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               214-652, gnl|bosTau2|chr20 (42556655-42557110)
               

               
               214-652, gnl|Hg17|chr5 (1515183-1514643)
               

               
               214-652, gnl|Mm7|chr13 (70447451-70447855)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

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               ill (0.351185)
               

               
               lnt (0.284616)
               

               
               fcc (0.197785)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.351185)
               

               
               lnt (0.284616)
               

               
               fcc (0.197785)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)

	214-652, gnl\|bosTau2\|chr20 (42556655-42557110)
	214-652, gnl\|Hg17\|chr5 (1515183-1514643)
	214-652, gnl\|Mm7\|chr13 (70447451-70447855)

	ill (0.351185)
	lnt (0.284616)
	fcc (0.197785)
	cag (0.151194)
	hyp (0.142837)
	cov (0.132153)
	cly (0.120642)
	ecc (0.115035)