Non-Coding RNA Search

Ss1.1-Mixc-0041,h13.5

Sequence:


               
               TGGATGAACTATTCATATAGCAGCCTATGTCTGAGCAGTGAGGAATCAGAGAGCAGTGGG
GAGGATGAGGAATTTTGGGCTGAGCTGCAGAGTCTTCGGCAGAAGCACCTGTCAGAGGTG
GAGGCACTACAGACACTACAGAAGCAAGAAATTGAGGACTTGTACAGCAGGCTGGGGAAG
CAGCCCCCACCGGGTATTGTGGCCCCCGCTGCTATGCTGTCCAGCCGCCAGCGCCGCCTC
TCCAAGGGCAGCTTTCCCACCTCCCGGCGCAACAGCCTGCAGCGCTCTGAGCCCCTGGGC
CCTGGCATCATGCGAAGGAACTCCCTGAGTGGCAGCAGCACCGGCTCCCAGGAGCAGCGG
TGACTTCTGAACAGAAGCCATGTGTCTCACCCACACCAGGGCCCACCATGGAGCTTGTGC
TCTCAGAATCTGCTGACCAACACAACTCTGCAAGGAAGACCTTGGCACTGAGGGAGTAGG
AGGCCCAAGGGGCATGGAGAGTGCTACTCCATTATTATAAGAGTCAAAGATGTTGGAGCT
GTCTGCTGTGTGTAGAAGGCAGAAGTCCTGCGGCCTACCATCCTCATCCTTGCCACTTCC
CCAGCCAAGAGTCAACCACTAAGCAATCCCACCAGAGCCCAGATGCTTCTAGGGGGCACA
CTCCCAGCTGAGCATGAGGAGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGATGAACTATTCATATAGCAGCCTATGTCTGAGCAGTGAGGAATCAGAGAGCAGTGGG
GAGGATGAGGAATTTTGGGCTGAGCTGCAGAGTCTTCGGCAGAAGCACCTGTCAGAGGTG
GAGGCACTACAGACACTACAGAAGCAAGAAATTGAGGACTTGTACAGCAGGCTGGGGAAG
CAGCCCCCACCGGGTATTGTGGCCCCCGCTGCTATGCTGTCCAGCCGCCAGCGCCGCCTC
TCCAAGGGCAGCTTTCCCACCTCCCGGCGCAACAGCCTGCAGCGCTCTGAGCCCCTGGGC
CCTGGCATCATGCGAAGGAACTCCCTGAGTGGCAGCAGCACCGGCTCCCAGGAGCAGCGG
TGACTTCTGAACAGAAGCCATGTGTCTCACCCACACCAGGGCCCACCATGGAGCTTGTGC
TCTCAGAATCTGCTGACCAACACAACTCTGCAAGGAAGACCTTGGCACTGAGGGAGTAGG
AGGCCCAAGGGGCATGGAGAGTGCTACTCCATTATTATAAGAGTCAAAGATGTTGGAGCT
GTCTGCTGTGTGTAGAAGGCAGAAGTCCTGCGGCCTACCATCCTCATCCTTGCCACTTCC
CCAGCCAAGAGTCAACCACTAAGCAATCCCACCAGAGCCCAGATGCTTCTAGGGGGCACA
CTCCCAGCTGAGCATGAGGAGGGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26359050|dbj|BAC25198.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26359050|dbj|BAC25198.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               105-305, gnl|bosTau2|chr19 (38942812-38942612)
               

               
               105-305, gnl|Hg17|chr17 (38201667-38201867)
               

               
               105-305, gnl|Mm7|chr11 (101385517-101385717)
               


               
               360-683, gnl|bosTau2|chr19 (38942246-38941928)
               

               
               360-683, gnl|Hg17|chr17 (38202229-38202558)
               

               
               360-683, gnl|Mm7|chr11 (101386071-101386391)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               105-305, gnl|bosTau2|chr19 (38942812-38942612)
               

               
               105-305, gnl|Hg17|chr17 (38201667-38201867)
               

               
               105-305, gnl|Mm7|chr11 (101385517-101385717)
               


               
               360-683, gnl|bosTau2|chr19 (38942246-38941928)
               

               
               360-683, gnl|Hg17|chr17 (38202229-38202558)
               

               
               360-683, gnl|Mm7|chr11 (101386071-101386391)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hyp (0.142837)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)

	105-305, gnl\|bosTau2\|chr19 (38942812-38942612)
	105-305, gnl\|Hg17\|chr17 (38201667-38201867)
	105-305, gnl\|Mm7\|chr11 (101385517-101385717)

	360-683, gnl\|bosTau2\|chr19 (38942246-38941928)
	360-683, gnl\|Hg17\|chr17 (38202229-38202558)
	360-683, gnl\|Mm7\|chr11 (101386071-101386391)