Ss1.1-Mixc-0041,l13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCCCCCTGCCCCCCATTTTACAAAGGAGTGAGGCTGAGGCCCAGAGATGGGGGGTGGCTG GATCAGAGCCCCAGCAAGGCTCCAGGCTCATCCTCCACAGCATTTGGGCCTCTCTTCCAG GGGCCTCTGTCTCAGCTGGGGGAGCTGTGTCTCCCACCTCAAGGAAACAAGGTTTGCTTG CAAAGCCCACCAAGACGCCGACTACGCCACCACCCAAGCGGACTCCCACCAAAGCGTCGC ACGCCGTGTCTGTGGCCCCAGAGGTGTGCCGGCCTTCGGGCAACGCAGACCCGAGGAAGC TGGACTTCGCCTTTATATAGATAACAGGAATTCCTCAAATAGAGTGGAAGGGCTGAACTG AATCCTGGAAAGTCATCACCATCACCTCTAAAGGAAATCCAATGCAAAAAATCTCTAAGT GTCCCAGGCCCGTGGTCAGACAGGGAGGCAAGGCCAGCCCTTCAGAGAGATTCATCTAAC ATGGCGACATGCCCCACGCAGCAGCCACTACAAGACCTCAAACTGAGACCTCTCCGGGCA GGAGAGCAAGGGTCCTTTCCTTTCGATGGGTTTTTTCTTCCTTCCTTCGCAGAATTATGA CCGAGTAGCTGGCCTAACCCTGGACCAGCAGCTGTGGATATGGGGCAGACTCTGATGAGG AGGCTAGGAGCCCAGACTGCTGCCCTCTACGCGCATTTCCTCTCTTAACCATGTTGTACA AGAAATGCGTGCTCGCTGGAAGAAAAAACTAAATAATAAGAATCACCCATAATTCTTTAC TTCTGGTATAACTCATTGTTAATATTATGGTGTACATTCTTCCTGATTATTTTCTATGCA CATATATAAAATGTATACTTTTTAAAAATGGAATTGTACTATGCTTTTAGAAGTGGTTTT AATAAACATTTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCCCCCTGCCCCCCATTTTACAAAGGAGTGAGGCTGAGGCCCAGAGATGGGGGGTGGCTG GATCAGAGCCCCAGCAAGGCTCCAGGCTCATCCTCCACAGCATTTGGGCCTCTCTTCCAG GGGCCTCTGTCTCAGCTGGGGGAGCTGTGTCTCCCACCTCAAGGAAACAAGGTTTGCTTG CAAAGCCCACCAAGACGCCGACTACGCCACCACCCAAGCGGACTCCCACCAAAGCGTCGC ACGCCGTGTCTGTGGCCCCAGAGGTGTGCCGGCCTTCGGGCAACGCAGACCCGAGGAAGC TGGACTTCGCCTTTATATAGATAACAGGAATTCCTCAAATAGAGTGGAAGGGCTGAACTG AATCCTGGAAAGTCATCACCATCACCTCTAAAGGAAATCCAATGCAAAAAATCTCTAAGT GTCCCAGGCCCGTGGTCAGACAGGGAGGCAAGGCCAGCCCTTCAGAGAGATTCATCTAAC ATGGCGACATGCCCCACGCAGCAGCCACTACAAGACCTCAAACTGAGACCTCTCCGGGCA GGAGAGCAAGGGTCCTTTCCTTTCGATGGGTTTTTTCTTCCTTCCTTCGCAGAATTATGA CCGAGTAGCTGGCCTAACCCTGGACCAGCAGCTGTGGATATGGGGCAGACTCTGATGAGG AGGCTAGGAGCCCAGACTGCTGCCCTCTACGCGCATTTCCTCTCTTAACCATGTTGTACA AGAAATGCGTGCTCGCTGGAAGAAAAAACTAAATAATAAGAATCACCCATAATTCTTTAC TTCTGGTATAACTCATTGTTAATATTATGGTGTACATTCTTCCTGATTATTTTCTATGCA CATATATAAAATGTATACTTTTTAAAAATGGAATTGTACTATGCTTTTAGAAGTGGTTTT AATAAACATTTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 684-792, + strand, RNAz p=0.590381 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 684-792, + strand, RNAz p=0.590381 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_171827, + |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 425-535, gnl|bosTau2|chr11 (35472940-35472830) | |
| 425-535, gnl|canFam2|chr17 (41465433-41465060) | |
| 425-535, gnl|dasNov1|scaffold_70493 (3400-3822) | |
| 425-535, gnl|echTel1|scaffold_310041 (79069-79399) | |
| 425-535, gnl|hg17|chr2 (86924559-86924914) | |
| 425-535, gnl|Hg17|chr2 (86924755-86924657) | |
| 425-535, gnl|loxAfr1|scaffold_57602 (6193-6531) | |
| 425-535, gnl|mm7|chr6 (71394984-71394623) | |
| 425-535, gnl|Mm7|chr6 (71394788-71394893) | |
| 425-535, gnl|oryCun1|scaffold_172507 (18556-18894) | |
| 425-535, gnl|panTro1|chr12 (89803207-89803562) | |
| 425-535, gnl|rheMac2|chr13 (88398621-88398976) | |
| 425-535, gnl|rn3|chr4 (104838105-104837763) | |
| 609-908, gnl|bosTau2|chr11 (35471948-35471649) | |
| 609-908, gnl|canFam2|chr17 (41466670-41466299) | |
| 609-908, gnl|dasNov1|scaffold_70493 (1446-1830) | |
| 609-908, gnl|echTel1|scaffold_310041 (77788-78144) | |
| 609-908, gnl|hg17|chr2 (86923324-86923705) | |
| 609-908, gnl|Hg17|chr2 (86923739-86923427) | |
| 609-908, gnl|loxAfr1|scaffold_57602 (4694-5065) | |
| 609-908, gnl|mm7|chr6 (71397081-71396747) | |
| 609-908, gnl|oryCun1|scaffold_172507 (17618-17948) | |
| 609-908, gnl|panTro1|chr12 (89801973-89802354) | |
| 609-908, gnl|rheMac2|chr13 (88397285-88397663) | |
| 609-908, gnl|rn3|chr4 (104839193-104838868) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 425-535, gnl|bosTau2|chr11 (35472940-35472830) | |
| 425-535, gnl|canFam2|chr17 (41465433-41465060) | |
| 425-535, gnl|dasNov1|scaffold_70493 (3400-3822) | |
| 425-535, gnl|echTel1|scaffold_310041 (79069-79399) | |
| 425-535, gnl|hg17|chr2 (86924559-86924914) | |
| 425-535, gnl|Hg17|chr2 (86924755-86924657) | |
| 425-535, gnl|loxAfr1|scaffold_57602 (6193-6531) | |
| 425-535, gnl|mm7|chr6 (71394984-71394623) | |
| 425-535, gnl|Mm7|chr6 (71394788-71394893) | |
| 425-535, gnl|oryCun1|scaffold_172507 (18556-18894) | |
| 425-535, gnl|panTro1|chr12 (89803207-89803562) | |
| 425-535, gnl|rheMac2|chr13 (88398621-88398976) | |
| 425-535, gnl|rn3|chr4 (104838105-104837763) | |
| 609-908, gnl|bosTau2|chr11 (35471948-35471649) | |
| 609-908, gnl|canFam2|chr17 (41466670-41466299) | |
| 609-908, gnl|dasNov1|scaffold_70493 (1446-1830) | |
| 609-908, gnl|echTel1|scaffold_310041 (77788-78144) | |
| 609-908, gnl|hg17|chr2 (86923324-86923705) | |
| 609-908, gnl|Hg17|chr2 (86923739-86923427) | |
| 609-908, gnl|loxAfr1|scaffold_57602 (4694-5065) | |
| 609-908, gnl|mm7|chr6 (71397081-71396747) | |
| 609-908, gnl|oryCun1|scaffold_172507 (17618-17948) | |
| 609-908, gnl|panTro1|chr12 (89801973-89802354) | |
| 609-908, gnl|rheMac2|chr13 (88397285-88397663) | |
| 609-908, gnl|rn3|chr4 (104839193-104838868) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| cje (0.826173) | |
| med (0.58126) | |
| thg (0.253582) | |
| cbe (0.239234) | |
| aor (0.195274) | |
| sto (0.179824) | |
| fty (0.17584) | |
| lnt (0.142308) | |
| che (0.136314) | |
| ecc (0.115035) | |
| cty (0.10408) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cje (0.826173) | |
| med (0.58126) | |
| thg (0.253582) | |
| cbe (0.239234) | |
| aor (0.195274) | |
| sto (0.179824) | |
| fty (0.17584) | |
| lnt (0.142308) | |
| che (0.136314) | |
| ecc (0.115035) | |
| cty (0.10408) |