Non-Coding RNA Search

Ss1.1-Mixc-0041,o01.5

Sequence:


               
               AAGGGGGAAGTCAGGTGGCTGCCACCGCTGCCGCCGCGCCGCGATCTGTCGCCGGAAGGA
AAATGGCGGATTTGGAAGAGCAGTTGTCTGATGAGGAGAAGGTACGTATAGCAGCGAAAT
TCATCATTCATGCCCCTCCTGGAGAATTTAATGAGGTGTTTAATGATGTTCGGTTACTGC
TTAATAATGATAATCTTCTCAGGGAAGGAGCAGCCCATGCATTTGCACAGTATAACCTGG
ACCAGTTTACTCCAGTAAAAATTGAAGGTTATGAAGATCAGGTATTGATAACAGAACATG
GTGACTTGGGAAATGGAAAGTTTTTGGATCCAAAAAACAGAATCTGTTTCAAATTTGATC
ACTTAAGAAAGGAAGCAACTGATCCAAGACCCTATGAAGCAGAAAATGCAGTTGAATCAT
GGAGAACTTCAGTAGAAACTGCTCTGCGAGCTTATGTAAAAGAACATTATCCGAATGGAG
TCTGCACTGTATATGGTAAAAAAATAGATGGGCAGCAAACCATTATTGCATGCATAGAAA
GCCATCAGTTTCAAGCAAAAAACTTTTGGAATGGTCGTTGGAGGTCAGAGTGGAAGTTTA
CAATCACTCCTTCAACCACTCAGGTGGTTGGCATCTTGAAAATTCAGGTTCATTATTATG
AAGATGGTAATGTTCAGCTAGTGAGTCATAAAGATATACAAGATTCCCTAACAGTGTCTA
ATGAGGTGCAAACAGCAAAAGAATTTATAAAGATTGTAGAGGCTGCAGAAAATGAATATC
AGACTGCCATCAGTGAGAATTATCAGACAATGTCGGACACTACTTTCAAAGCCTTACGTC
GACAGTTGCCAGTTACACGCACTAAGATTGATTGGAACAAGATCCTTAGCTACAAGATTG
GCAAAGAGATGCAGAATGCATAAGATCAACATTGCATGACCGGATCATTTTAGTGTCTTT
GCGTTTTAAAAAAAAAAAAATCATTGCAGAAGTATTCAGAACTGTCAAGCTACCCAGTCA
GATGGGCTGTTGCCATTTAAAAATCACTGTAATTAATTAGTTTGGTTAGAGCACAAAGCT
TAGCTAATCAACCATTATTTTTTATTTCTTTTCTTCAAAGAAAACTGAAATTCATTTTAG
TTTAAATCTTTTACTTTCTGTTATGCCTTTCTTTCTTACAATGAAGAGATGATTCCTCTA
GTTTAATGTCAAAAGTTTTTGAAGTGTTTCAAAAATATTTTACTTACCATAACCCTGAAA
TTGTTGTCTTCAGTTTATGAAGTGGGTAATTTTTGATATTTGCCCAGTTCTTTTTAATGA
GGTCAATAATGGACATTCTAGTTTAAGGTGGTTGATGGATTTAGCCATATATGCTGCTAA
AGAAATTGTCTACCTTTTTCCCCTCACCTCTTTGATTTATGTAAGATTGAGATTAGAGGG
AAAGCGTTTTATATATCAATTGTGTTTAAACCTTTCAGGAAGGTTATTTAGCTAGCTTAG
TGGATAACTAAACTTTTTTTAAACAAGGCCAAGGTCTAATGCTGTTTTGAGATTTCTGAA
TTAAATGAAAATACTTATTTCAGAAATGCATTTAATGCTTTTTTTCTTGTGACAGTTATG
CAAATTAGCTTGAATTCCATATGTCCCTGAGTTATTTTTATCATAAAGCCACAAATGTAT
TATAACAAGGCAAATTGTAATATATATAATCCTGAACTCATGACCATGTCTCAGTTTATT
TTTTTCTCGATTGAAAAGTACTAAAAATTCAATGTGACATTAAAATGAAAATTTTCCTAT
TTATTCGAGTATAAAAATCACTTACCAGTGAATCATACGCTATTTTAAAATACTTTCTTT
GGATGTTTGTGATTCTTACCTGGTTATAAATTAGAAAAGCTGGGAGTACATATGGTATGC
AGTTAAGTCTAAATTTTTCCATCTTCCTGTGCATCATAAGCATGTTTGTAATATTTAAAA
AATATACATTTACTGATGCTACAGGAGTTTTAAGCCTGTGGTGAATGCTAGTACTTTACT
GTAGGGAGGGTGGATTTATGGTTTCATTCAATTGAGTATTGCTTATTATACTCTGGTGGA
ATCCTTTTCTCACATGCTCCTGCAGATGTCTGGGCCTGGAAATGTTTTTTTAAAAATACC
ACTTTTATTATGCACAATAAAATATTTCAGTAGCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGGGGGAAGTCAGGTGGCTGCCACCGCTGCCGCCGCGCCGCGATCTGTCGCCGGAAGGA
AAATGGCGGATTTGGAAGAGCAGTTGTCTGATGAGGAGAAGGTACGTATAGCAGCGAAAT
TCATCATTCATGCCCCTCCTGGAGAATTTAATGAGGTGTTTAATGATGTTCGGTTACTGC
TTAATAATGATAATCTTCTCAGGGAAGGAGCAGCCCATGCATTTGCACAGTATAACCTGG
ACCAGTTTACTCCAGTAAAAATTGAAGGTTATGAAGATCAGGTATTGATAACAGAACATG
GTGACTTGGGAAATGGAAAGTTTTTGGATCCAAAAAACAGAATCTGTTTCAAATTTGATC
ACTTAAGAAAGGAAGCAACTGATCCAAGACCCTATGAAGCAGAAAATGCAGTTGAATCAT
GGAGAACTTCAGTAGAAACTGCTCTGCGAGCTTATGTAAAAGAACATTATCCGAATGGAG
TCTGCACTGTATATGGTAAAAAAATAGATGGGCAGCAAACCATTATTGCATGCATAGAAA
GCCATCAGTTTCAAGCAAAAAACTTTTGGAATGGTCGTTGGAGGTCAGAGTGGAAGTTTA
CAATCACTCCTTCAACCACTCAGGTGGTTGGCATCTTGAAAATTCAGGTTCATTATTATG
AAGATGGTAATGTTCAGCTAGTGAGTCATAAAGATATACAAGATTCCCTAACAGTGTCTA
ATGAGGTGCAAACAGCAAAAGAATTTATAAAGATTGTAGAGGCTGCAGAAAATGAATATC
AGACTGCCATCAGTGAGAATTATCAGACAATGTCGGACACTACTTTCAAAGCCTTACGTC
GACAGTTGCCAGTTACACGCACTAAGATTGATTGGAACAAGATCCTTAGCTACAAGATTG
GCAAAGAGATGCAGAATGCATAAGATCAACATTGCATGACCGGATCATTTTAGTGTCTTT
GCGTTTTAAAAAAAAAAAAATCATTGCAGAAGTATTCAGAACTGTCAAGCTACCCAGTCA
GATGGGCTGTTGCCATTTAAAAATCACTGTAATTAATTAGTTTGGTTAGAGCACAAAGCT
TAGCTAATCAACCATTATTTTTTATTTCTTTTCTTCAAAGAAAACTGAAATTCATTTTAG
TTTAAATCTTTTACTTTCTGTTATGCCTTTCTTTCTTACAATGAAGAGATGATTCCTCTA
GTTTAATGTCAAAAGTTTTTGAAGTGTTTCAAAAATATTTTACTTACCATAACCCTGAAA
TTGTTGTCTTCAGTTTATGAAGTGGGTAATTTTTGATATTTGCCCAGTTCTTTTTAATGA
GGTCAATAATGGACATTCTAGTTTAAGGTGGTTGATGGATTTAGCCATATATGCTGCTAA
AGAAATTGTCTACCTTTTTCCCCTCACCTCTTTGATTTATGTAAGATTGAGATTAGAGGG
AAAGCGTTTTATATATCAATTGTGTTTAAACCTTTCAGGAAGGTTATTTAGCTAGCTTAG
TGGATAACTAAACTTTTTTTAAACAAGGCCAAGGTCTAATGCTGTTTTGAGATTTCTGAA
TTAAATGAAAATACTTATTTCAGAAATGCATTTAATGCTTTTTTTCTTGTGACAGTTATG
CAAATTAGCTTGAATTCCATATGTCCCTGAGTTATTTTTATCATAAAGCCACAAATGTAT
TATAACAAGGCAAATTGTAATATATATAATCCTGAACTCATGACCATGTCTCAGTTTATT
TTTTTCTCGATTGAAAAGTACTAAAAATTCAATGTGACATTAAAATGAAAATTTTCCTAT
TTATTCGAGTATAAAAATCACTTACCAGTGAATCATACGCTATTTTAAAATACTTTCTTT
GGATGTTTGTGATTCTTACCTGGTTATAAATTAGAAAAGCTGGGAGTACATATGGTATGC
AGTTAAGTCTAAATTTTTCCATCTTCCTGTGCATCATAAGCATGTTTGTAATATTTAAAA
AATATACATTTACTGATGCTACAGGAGTTTTAAGCCTGTGGTGAATGCTAGTACTTTACT
GTAGGGAGGGTGGATTTATGGTTTCATTCAATTGAGTATTGCTTATTATACTCTGGTGGA
ATCCTTTTCTCACATGCTCCTGCAGATGTCTGGGCCTGGAAATGTTTTTTTAAAAATACC
ACTTTTATTATGCACAATAAAATATTTCAGTAGCTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5DQJ3_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5DQJ3_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               39-156, + strand, RNAz p=0.603629

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               39-156, + strand, RNAz p=0.603629

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               1-236, gnl|bosTau2|chr11 (9165106-9164871)
               


               
               248-1775, gnl|bosTau2|chr11 (9164884-9163390)
               

               
               248-1775, gnl|Hg17|chr15 (87334434-87333015)
               

               
               248-1775, gnl|Mm7|chr6 (17596680-17606761)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-236, gnl|bosTau2|chr11 (9165106-9164871)
               


               
               248-1775, gnl|bosTau2|chr11 (9164884-9163390)
               

               
               248-1775, gnl|Hg17|chr15 (87334434-87333015)
               

               
               248-1775, gnl|Mm7|chr6 (17596680-17606761)

Expressed library(ies): 56 entry(ies)

More info

Expressed library(ies): 56 entry(ies)

Help | Less info


               
               cbl (2.06635)
               

               
               sme (1.22175)
               

               
               fat (1.03199)
               

               
               tbr (0.925069)
               

               
               ste (0.811249)
               

               
               ldo (0.776021)
               

               
               liv (0.731422)
               

               
               ret (0.643666)
               

               
               ute (0.531138)
               

               
               cty (0.5204)
               

               
               mgp (0.461361)
               

               
               isp (0.451128)
               

               
               nms (0.427716)
               

               
               mas (0.42061)
               

               
               hea (0.408998)
               

               
               ssp (0.406559)
               

               
               kid (0.389206)
               

               
               ebs (0.354904)
               

               
               fco (0.314416)
               

               
               pty (0.285429)
               

               
               ova (0.258264)
               

               
               thg (0.253582)
               

               
               ese (0.253004)
               

               
               pgl (0.236967)
               

               
               ecc (0.23007)
               

               
               jej (0.197844)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               ctl (0.153069)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 56 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (2.06635)
               

               
               sme (1.22175)
               

               
               fat (1.03199)
               

               
               tbr (0.925069)
               

               
               ste (0.811249)
               

               
               ldo (0.776021)
               

               
               liv (0.731422)
               

               
               ret (0.643666)
               

               
               ute (0.531138)
               

               
               cty (0.5204)
               

               
               mgp (0.461361)
               

               
               isp (0.451128)
               

               
               nms (0.427716)
               

               
               mas (0.42061)
               

               
               hea (0.408998)
               

               
               ssp (0.406559)
               

               
               kid (0.389206)
               

               
               ebs (0.354904)
               

               
               fco (0.314416)
               

               
               pty (0.285429)
               

               
               ova (0.258264)
               

               
               thg (0.253582)
               

               
               ese (0.253004)
               

               
               pgl (0.236967)
               

               
               ecc (0.23007)
               

               
               jej (0.197844)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               ctl (0.153069)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	1-236, gnl\|bosTau2\|chr11 (9165106-9164871)

	248-1775, gnl\|bosTau2\|chr11 (9164884-9163390)
	248-1775, gnl\|Hg17\|chr15 (87334434-87333015)
	248-1775, gnl\|Mm7\|chr6 (17596680-17606761)

	cbl (2.06635)
	sme (1.22175)
	fat (1.03199)
	tbr (0.925069)
	ste (0.811249)
	ldo (0.776021)
	liv (0.731422)
	ret (0.643666)
	ute (0.531138)
	cty (0.5204)
	mgp (0.461361)
	isp (0.451128)
	nms (0.427716)
	mas (0.42061)
	hea (0.408998)
	ssp (0.406559)
	kid (0.389206)
	ebs (0.354904)
	fco (0.314416)
	pty (0.285429)
	ova (0.258264)
	thg (0.253582)
	ese (0.253004)
	pgl (0.236967)
	ecc (0.23007)
	jej (0.197844)
	col (0.195008)
	nlu (0.191681)
	nep (0.183925)
	sag (0.182715)
	mgm (0.180343)
	sto (0.179824)
	gul (0.177588)
	fty (0.17584)
	ill (0.175593)
	ton (0.1755)
	fbs (0.175346)
	duo (0.172801)
	cki (0.165235)
	nco (0.161734)
	ctl (0.153069)
	bfe (0.149858)
	ski (0.146735)
	lin (0.145603)
	hyp (0.142837)
	lnt (0.142308)
	lyg (0.133103)
	nmm (0.132802)
	sug (0.127291)
	bla (0.124347)
	tra (0.123092)
	eru (0.120048)
	med (0.116252)
	jca (0.11396)
	spc (0.113366)
	eje (0.0988338)