Non-Coding RNA Search

Ss1.1-Mixc-0041,o16.5

Sequence:


               
               CCAGCCCCCTCCCCTCTTAAACACAGAAACGAATGCCCTCTACGTCATGAGCCCACGAAC
CCAGCACTGACACCCCACTGTCCCCTAACAGCCCTCAGCCCCACCCTCTCCCGGTCACAC
TGGACAGCCTCCAGGGACCTGCTCGGCAGCCATGCTCCCAGCCCTTAGAGCTGGGGGCAG
GCTCCTGAGATGTCCAGCTGGTGCGCTGGGTTCTCCAGCAGCAGCCAGGTCCCCAGAACG
GGAGAGACTGTGTACAAAAGCCCCAAGTGTGCAAGGATTGACGTGTGAGACCCCGGATGT
GCAAGGTCCCGGGTGTGTGCAAGGTCCCGGGTGTGTGCGAGTGCGTGTCCACGCGGTGGG
CTGGCCCCATGGCCTGGGCATCTCTTGCATGCTGGTAGTTGTCCCCAGTTCGGCTCCCCT
TCCCCCTGGCCCAACCCTCAGCCCTCTCTCCACCCTCCGTGGACACTGGTTCACAATTCC
CAGACAGGCCAAAGGCAGCTGCAGGAGTGCCCTGGGGGCTAAAAGGACTAGAGTAGTCAC
AGAAAGGTGATAGGACTCAGGCAGGTCTGGGGGGTCACAGTCAGAGGTTCACAGACAGCT
TGAGTGACAGCTGGTCTTGGGTACCGGGGTTAGAATGGAGGGCTCATTCTACAACTACAG
TAGTCCCTGAAAGACCATCCTCTCCGGCCCCCTGTCTCCCAGTGCTATGAGCTCCATACA
TCCCTGTGACCACTCAGTACCCCTGTCCCCACCCCTCCAGCCGTGGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGCCCCCTCCCCTCTTAAACACAGAAACGAATGCCCTCTACGTCATGAGCCCACGAAC
CCAGCACTGACACCCCACTGTCCCCTAACAGCCCTCAGCCCCACCCTCTCCCGGTCACAC
TGGACAGCCTCCAGGGACCTGCTCGGCAGCCATGCTCCCAGCCCTTAGAGCTGGGGGCAG
GCTCCTGAGATGTCCAGCTGGTGCGCTGGGTTCTCCAGCAGCAGCCAGGTCCCCAGAACG
GGAGAGACTGTGTACAAAAGCCCCAAGTGTGCAAGGATTGACGTGTGAGACCCCGGATGT
GCAAGGTCCCGGGTGTGTGCAAGGTCCCGGGTGTGTGCGAGTGCGTGTCCACGCGGTGGG
CTGGCCCCATGGCCTGGGCATCTCTTGCATGCTGGTAGTTGTCCCCAGTTCGGCTCCCCT
TCCCCCTGGCCCAACCCTCAGCCCTCTCTCCACCCTCCGTGGACACTGGTTCACAATTCC
CAGACAGGCCAAAGGCAGCTGCAGGAGTGCCCTGGGGGCTAAAAGGACTAGAGTAGTCAC
AGAAAGGTGATAGGACTCAGGCAGGTCTGGGGGGTCACAGTCAGAGGTTCACAGACAGCT
TGAGTGACAGCTGGTCTTGGGTACCGGGGTTAGAATGGAGGGCTCATTCTACAACTACAG
TAGTCCCTGAAAGACCATCCTCTCCGGCCCCCTGTCTCCCAGTGCTATGAGCTCCATACA
TCCCTGTGACCACTCAGTACCCCTGTCCCCACCCCTCCAGCCGTGGTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               29-218, - strand, RNAz p=0.99615

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               29-218, - strand, RNAz p=0.99615

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-554, gnl|bosTau2|chr7 (26231707-26231203)
               

               
               1-554, gnl|Hg17|chr5 (175956273-175955685)
               


               
               567-768, gnl|bosTau2|chr7 (26231209-26231011)
               

               
               567-768, gnl|Hg17|chr5 (175955691-175955459)
               

               
               567-768, gnl|Mm7|chr13 (53822759-53822527)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-554, gnl|bosTau2|chr7 (26231707-26231203)
               

               
               1-554, gnl|Hg17|chr5 (175956273-175955685)
               


               
               567-768, gnl|bosTau2|chr7 (26231209-26231011)
               

               
               567-768, gnl|Hg17|chr5 (175955691-175955459)
               

               
               567-768, gnl|Mm7|chr13 (53822759-53822527)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ece (0.45861)
               

               
               fcc (0.39557)
               

               
               ecc (0.115035)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.45861)
               

               
               fcc (0.39557)
               

               
               ecc (0.115035)

	1-554, gnl\|bosTau2\|chr7 (26231707-26231203)
	1-554, gnl\|Hg17\|chr5 (175956273-175955685)

	567-768, gnl\|bosTau2\|chr7 (26231209-26231011)
	567-768, gnl\|Hg17\|chr5 (175955691-175955459)
	567-768, gnl\|Mm7\|chr13 (53822759-53822527)