Non-Coding RNA Search

Ss1.1-Mixc-0042,a22.5

Sequence:


               
               CCACCGACGAGTGGTGCCGCGCCCTCCTCTGCCCCGTCGGCTACCACTGCCCCTTCGCTG
CCTGCGTCGTTCACCTTGTCGTTTGGGGGCCTCCTGAGCTCAGCATCTGCTCCCACCCCG
CCCGTGGCCTCTGGTAAAAGCGCCGAAGAAGCCGCGCCGTCGGCTTTGCCTGAGAAGCCG
GGTGGCAGCGAGGCCTCGGCACCAGCCGCCTCCCTTCTGGGGCAGCACCCAGCAGCCCCG
CTGCCCCAGGCTCCTCTTCCGGCTTCGGACTCTGTCAAGAAAGAACCCGCTCCGGCCCAG
CCCGCCGTCAGCAACCCCAGCGCTGCGGCGTCCGGGTCCGTTGTCGCAGCGCCTCCCGCG
GAGCCCACGCCAGCGGCCCCTGGGAGCCCCGACGTCCAGCCGGAGCCGCCAGCGCCCAGC
CTTTCGGCTCCCGGGCAGGCCGCCGTCGCCGCACCTGCAGTCGCAAGCCCGGTCCCTGCG
GCCCCAGAAACATCCCGACCCCCCGCAACCGCCAGTGTTGTGTCCAGTGGTGGCCCGAGC
CCCGCTGCGGAGACGCCGGTGTTTGGGACTGTCACTTCGGGCTCGTCTGTCTTTACTCAG
CCACCTGCCAGCAGTTCTAGCTCAGCTTTCAGCCAGCTCACCGGCAACCCAGCCACTGCC
CCCTCTGCCACCCCCATGTTCGGGCAGGTGGCCGCCAGCACGGCGCCAAGCCTGTTTGGG
CAGCAGACAGGCAGCCTCGCCAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACCGACGAGTGGTGCCGCGCCCTCCTCTGCCCCGTCGGCTACCACTGCCCCTTCGCTG
CCTGCGTCGTTCACCTTGTCGTTTGGGGGCCTCCTGAGCTCAGCATCTGCTCCCACCCCG
CCCGTGGCCTCTGGTAAAAGCGCCGAAGAAGCCGCGCCGTCGGCTTTGCCTGAGAAGCCG
GGTGGCAGCGAGGCCTCGGCACCAGCCGCCTCCCTTCTGGGGCAGCACCCAGCAGCCCCG
CTGCCCCAGGCTCCTCTTCCGGCTTCGGACTCTGTCAAGAAAGAACCCGCTCCGGCCCAG
CCCGCCGTCAGCAACCCCAGCGCTGCGGCGTCCGGGTCCGTTGTCGCAGCGCCTCCCGCG
GAGCCCACGCCAGCGGCCCCTGGGAGCCCCGACGTCCAGCCGGAGCCGCCAGCGCCCAGC
CTTTCGGCTCCCGGGCAGGCCGCCGTCGCCGCACCTGCAGTCGCAAGCCCGGTCCCTGCG
GCCCCAGAAACATCCCGACCCCCCGCAACCGCCAGTGTTGTGTCCAGTGGTGGCCCGAGC
CCCGCTGCGGAGACGCCGGTGTTTGGGACTGTCACTTCGGGCTCGTCTGTCTTTACTCAG
CCACCTGCCAGCAGTTCTAGCTCAGCTTTCAGCCAGCTCACCGGCAACCCAGCCACTGCC
CCCTCTGCCACCCCCATGTTCGGGCAGGTGGCCGCCAGCACGGCGCCAAGCCTGTTTGGG
CAGCAGACAGGCAGCCTCGCCAGC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               153-272, - strand, RNAz p=0.917245
               

               
               587-706, - strand, RNAz p=0.890308

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               153-272, - strand, RNAz p=0.917245
               

               
               587-706, - strand, RNAz p=0.890308

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               168-285, - strand, RNAmicro p=0.987317

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               168-285, - strand, RNAmicro p=0.987317

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-744, gnl|bosTau2|chr11 (81794342-81795089)
               

               
               3-744, gnl|Hg17|chr9 (131102767-131103520)
               

               
               3-744, gnl|Mm7|chr2 (32041139-32041844)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-744, gnl|bosTau2|chr11 (81794342-81795089)
               

               
               3-744, gnl|Hg17|chr9 (131102767-131103520)
               

               
               3-744, gnl|Mm7|chr2 (32041139-32041844)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	153-272, - strand, RNAz p=0.917245
	587-706, - strand, RNAz p=0.890308

	3-744, gnl\|bosTau2\|chr11 (81794342-81795089)
	3-744, gnl\|Hg17\|chr9 (131102767-131103520)
	3-744, gnl\|Mm7\|chr2 (32041139-32041844)