Ss1.1-Mixc-0042,e03.5
|
GGACTTACCAGGTCTGGCTGAACTAAGACATTGGCGGTGTCCTGCAAGTGGTCTAAAGCT
CTTATTTATGGTTTTAACTCTGTAAGAAAATCTAAATAGGAAGAGACGGAAAATGCCTTA
TGGAAAAACTAAAGCAAATTCTTTATAGGGAAAAATACGGGAATTTGATTACACGTAAAG
GGTGTTTATTTTAAAGACACAAACTACCCCAGTACCGAGAGCTCCTGGCCTCACGGTGCC
TATTCCTCCCGCTCCCTGTCCTGAGAATCACCAAACCAAGGGACTCGCAGCCTTTGGGGC
TGGGTCCTGCGCACGAGGCTGGTTTTCACACTCCTAGACCAACATCAAGAAATTGAAGAC
CCAACCCGGCGTGTGGACGTGACGCACCGGGTTTGGCCTGTCAGCTCGCTCTGTGTCGGG
ACCGAAGGCCTGCGCGCGGCCAGCGGGGCCTGGGACGGGCGAGACGTCTGGAGCCCCGTG
TCCGTGTCCTCCTCTGTCCTGGCCACGCTCCGGGTAGGGGTGGGGACAGTGTGGGGACGG
CATGACCAGGAGGGAGGGGACAGCCCTGGGCTGAGGGCGCGAGGGGCCAGGGCTGGCCGC
AGCCCACCTGCCTGCCAACTCCCGACACGCGGCGCCGTAGCCGTGGTCTCCTCTGACGTC
GGGGAGGAAGAGACGCCGCACCTCCCGCAGGAGCCACGCGTCACAGACGGGCCCTAATCG
TACCTCCCTCCCCTGCTCTCCTCGCCCCCCGCCTCTGCAAAAGAGTATTAAGTCACAAAC
TAAAAACCAGAGAAGGCGTGCTTCTCCCCAGAGAAGGGACGTGCCCCTCCCCAAATCCTG
GGTCTGGGCACCTGGCCTGGTGGGCGTCTCCCCTCTGACACCAAGGGCAGCTGAGCCCTG
GGGCCCCTCGGCCCCTCTCTCTGGTTCCAGGTCTGACCCTGAGCCCTGGGCACAGGCCCC
TAGAAACGCCGAGGATGCCTGGGAACTGCCCCGGCTGCTACCCGGCCCAGCCTCGGCCCT
GCCTGCGCGGGGGCCTGGGGCTGGACAGGGGGCTGCACCTACTCCCGCGGCTCTGGCCCT
CCGCAGCGGCCGGGGGAGGACACTCCCAGGGAGGCGCCGGGACCGCGCTCCTGGCAGTGA
CTCCTAAGAGTCACGAGCCCGTCCTGACCCGACCTTTCAGTGACTTACAGCCACTGGGCC
ACCAAGGTCCAAGCAGGCGCCCCCAGCCCCGGTCTCAGGCCCGTCCCCAGGCGCCATGTC
CCTGTCACCCATTGCACTGATCATGAAGCCACTGGCACTGCCACGCACGTGGGACACGTG
CCATCAAGGCCCCTCCTGCCGGGCACCGTGGTAGGGGTGTCAGCCAGCTGTTTTCTCAGT
CCCGGGGCAGGTGGCTGGTTTCGAGCTTGTGTTGACTCTTGATACTTATTTACTGTAGAA
ATATAATTTATCATTTGTATCACG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGACTTACCAGGTCTGGCTGAACTAAGACATTGGCGGTGTCCTGCAAGTGGTCTAAAGCT
CTTATTTATGGTTTTAACTCTGTAAGAAAATCTAAATAGGAAGAGACGGAAAATGCCTTA
TGGAAAAACTAAAGCAAATTCTTTATAGGGAAAAATACGGGAATTTGATTACACGTAAAG
GGTGTTTATTTTAAAGACACAAACTACCCCAGTACCGAGAGCTCCTGGCCTCACGGTGCC
TATTCCTCCCGCTCCCTGTCCTGAGAATCACCAAACCAAGGGACTCGCAGCCTTTGGGGC
TGGGTCCTGCGCACGAGGCTGGTTTTCACACTCCTAGACCAACATCAAGAAATTGAAGAC
CCAACCCGGCGTGTGGACGTGACGCACCGGGTTTGGCCTGTCAGCTCGCTCTGTGTCGGG
ACCGAAGGCCTGCGCGCGGCCAGCGGGGCCTGGGACGGGCGAGACGTCTGGAGCCCCGTG
TCCGTGTCCTCCTCTGTCCTGGCCACGCTCCGGGTAGGGGTGGGGACAGTGTGGGGACGG
CATGACCAGGAGGGAGGGGACAGCCCTGGGCTGAGGGCGCGAGGGGCCAGGGCTGGCCGC
AGCCCACCTGCCTGCCAACTCCCGACACGCGGCGCCGTAGCCGTGGTCTCCTCTGACGTC
GGGGAGGAAGAGACGCCGCACCTCCCGCAGGAGCCACGCGTCACAGACGGGCCCTAATCG
TACCTCCCTCCCCTGCTCTCCTCGCCCCCCGCCTCTGCAAAAGAGTATTAAGTCACAAAC
TAAAAACCAGAGAAGGCGTGCTTCTCCCCAGAGAAGGGACGTGCCCCTCCCCAAATCCTG
GGTCTGGGCACCTGGCCTGGTGGGCGTCTCCCCTCTGACACCAAGGGCAGCTGAGCCCTG
GGGCCCCTCGGCCCCTCTCTCTGGTTCCAGGTCTGACCCTGAGCCCTGGGCACAGGCCCC
TAGAAACGCCGAGGATGCCTGGGAACTGCCCCGGCTGCTACCCGGCCCAGCCTCGGCCCT
GCCTGCGCGGGGGCCTGGGGCTGGACAGGGGGCTGCACCTACTCCCGCGGCTCTGGCCCT
CCGCAGCGGCCGGGGGAGGACACTCCCAGGGAGGCGCCGGGACCGCGCTCCTGGCAGTGA
CTCCTAAGAGTCACGAGCCCGTCCTGACCCGACCTTTCAGTGACTTACAGCCACTGGGCC
ACCAAGGTCCAAGCAGGCGCCCCCAGCCCCGGTCTCAGGCCCGTCCCCAGGCGCCATGTC
CCTGTCACCCATTGCACTGATCATGAAGCCACTGGCACTGCCACGCACGTGGGACACGTG
CCATCAAGGCCCCTCCTGCCGGGCACCGTGGTAGGGGTGTCAGCCAGCTGTTTTCTCAGT
CCCGGGGCAGGTGGCTGGTTTCGAGCTTGTGTTGACTCTTGATACTTATTTACTGTAGAA
ATATAATTTATCATTTGTATCACG
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
5-559, gnl|bosTau2|chr19 (26912307-26912850) |
|
5-559, gnl|canFam2|chr5 (43873309-43872567) |
|
5-559, gnl|dasNov1|scaffold_29017 (3542-4329) |
|
5-559, gnl|echTel1|scaffold_213943 (8724-9459) |
|
5-559, gnl|galGal2|chr14 (7270817-7271558) |
|
5-559, gnl|hg17|chr17 (19178615-19179355) |
|
5-559, gnl|Hg17|chr17 (19178878-19179471) |
|
5-559, gnl|loxAfr1|scaffold_175652 (969-219) |
|
5-559, gnl|mm7|chr11 (61600578-61599877) |
|
5-559, gnl|Mm7|chr11 (61600341-61599801) |
|
5-559, gnl|monDom2|scaffold_19 (7350740-7351484) |
|
5-559, gnl|oryCun1|scaffold_151840 (3357-4073) |
|
5-559, gnl|panTro1|chr19 (19504254-19504998) |
|
5-559, gnl|rheMac2|chr16 (18881630-18882387) |
|
5-559, gnl|rn3|chr10 (47692090-47691391) |
| |
|
1197-1462, gnl|bosTau2|chr19 (26913530-26913793) |
|
1197-1462, gnl|Hg17|chr17 (19180347-19180618) |
|
1197-1462, gnl|Mm7|chr11 (61599064-61598810) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
5-559, gnl|bosTau2|chr19 (26912307-26912850) |
|
5-559, gnl|canFam2|chr5 (43873309-43872567) |
|
5-559, gnl|dasNov1|scaffold_29017 (3542-4329) |
|
5-559, gnl|echTel1|scaffold_213943 (8724-9459) |
|
5-559, gnl|galGal2|chr14 (7270817-7271558) |
|
5-559, gnl|hg17|chr17 (19178615-19179355) |
|
5-559, gnl|Hg17|chr17 (19178878-19179471) |
|
5-559, gnl|loxAfr1|scaffold_175652 (969-219) |
|
5-559, gnl|mm7|chr11 (61600578-61599877) |
|
5-559, gnl|Mm7|chr11 (61600341-61599801) |
|
5-559, gnl|monDom2|scaffold_19 (7350740-7351484) |
|
5-559, gnl|oryCun1|scaffold_151840 (3357-4073) |
|
5-559, gnl|panTro1|chr19 (19504254-19504998) |
|
5-559, gnl|rheMac2|chr16 (18881630-18882387) |
|
5-559, gnl|rn3|chr10 (47692090-47691391) |
| |
|
1197-1462, gnl|bosTau2|chr19 (26913530-26913793) |
|
1197-1462, gnl|Hg17|chr17 (19180347-19180618) |
|
1197-1462, gnl|Mm7|chr11 (61599064-61598810) |
|
ece (0.45861) |
|
pla (0.401016) |
|
cbr (0.255951) |
|
jej (0.197844) |
|
fbs (0.175346) |
|
che (0.136314) |
|
ese (0.126502) |
|
eep (0.122564) |
|
ebs (0.118301) |
|
ecc (0.115035) |
|
jca (0.11396) |
|
eje (0.0988338) |
|
ece (0.45861) |
|
pla (0.401016) |
|
cbr (0.255951) |
|
jej (0.197844) |
|
fbs (0.175346) |
|
che (0.136314) |
|
ese (0.126502) |
|
eep (0.122564) |
|
ebs (0.118301) |
|
ecc (0.115035) |
|
jca (0.11396) |
|
eje (0.0988338) |
