Non-Coding RNA Search

Ss1.1-Mixc-0042,h10.5

Sequence:


               
               AGATTTGAAAACTCTTTATCACTGCTTAATAAGTTACACAAGATTCCACGTCAAGCTGAC
AGACAAAACATAAACTGGATTTAAAGTGCTGTATTAAATAACAAAAACACACTTTGCATA
CTGGGGTAATTAAAATGTGGAGGTTTGACACCTTTTAAGAAAGAATGAAAAACACACAGA
GGATTATCATTGTATAATTGTTCTGTTTAGCTCTTTTGAACTCTAAGTATGTGGTCTTAG
TCTTATTTAGAGGATGAGTTAGCTTCTCATATTTATGCTTAAGACATTTATCCATACTTA
ACAAGAGTGGTATCAGAGGCTACAACACAGTCAGGTATTCCAAATTCTTTTATGTTAAAT
AGGAACATTTTCTCAATACTACTTTTAAGTCACACCTCATTTATTTTCCTCCTAAGGAAC
TGCATAGGCTTTTAAAAAATAGTTTAAAGACTTGTAATAAACTACAGTTTGCTAAGAGTA
GAGGTACTCTGGTTAATGCTCAAAATGGTGTGGCCAGAGGAAAAGCAAGCATTATTAAAT
ATGAATGCAATCCTTACAAACACAAATTGAACCTTTTTTTCTCCCCAGAAAAAAAGCTAG
TCCAAAAAAAGGTCTCATTCTCTGAAGATTTATCATTTCCAAATCACAGTGAAAGGAACT
TGAGTAATTAACTAATTTTGTTTTCTACTATGTGCCTTAAGGATACCTCACTAAAAACTG
GTATCTGACACAAGAGAATGACATATGAAGAATGTAATATTGTAGTGACAGTACTGAGGT
TGATCGTTACATACATATTTAAACACTGAGTATTAAATGCTTACATCCTAATTGATATAG
AACATTGGTCCAATAACAAAAATAGAGAACAGTAGCTGGAAATTTATCTCATTCAATGTT
CAGAGATAAAAGGGTTAACCATCCTTTCCATTATTTTCTGCAGATAAGTCCTTTCTTTCA
TATTTAAATCTGCTGGCAACTGAATTCTGACATTTTTCCAAGCTACTGTATGAAGAGGAT
GCTGAAGGCCATCACAACACAGCATACTGCAACATAAGGACTCTTGCGTTCACCAATTCT
AGCACACTTCCAAAATATACCCAACAATCCAGTTTTATTTCTGTCCAGGAGGCTGGGTGC
CAAGGATCGGATATAAGCACAGGTACATATAAGCAGCAAGATTACAGTCAACAGACTCTG
AAAGTTGAAAATGGCAGACATAGTGAGGCCGGCGAAGCCCCAGCCACATCACTCTTCCGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGATTTGAAAACTCTTTATCACTGCTTAATAAGTTACACAAGATTCCACGTCAAGCTGAC
AGACAAAACATAAACTGGATTTAAAGTGCTGTATTAAATAACAAAAACACACTTTGCATA
CTGGGGTAATTAAAATGTGGAGGTTTGACACCTTTTAAGAAAGAATGAAAAACACACAGA
GGATTATCATTGTATAATTGTTCTGTTTAGCTCTTTTGAACTCTAAGTATGTGGTCTTAG
TCTTATTTAGAGGATGAGTTAGCTTCTCATATTTATGCTTAAGACATTTATCCATACTTA
ACAAGAGTGGTATCAGAGGCTACAACACAGTCAGGTATTCCAAATTCTTTTATGTTAAAT
AGGAACATTTTCTCAATACTACTTTTAAGTCACACCTCATTTATTTTCCTCCTAAGGAAC
TGCATAGGCTTTTAAAAAATAGTTTAAAGACTTGTAATAAACTACAGTTTGCTAAGAGTA
GAGGTACTCTGGTTAATGCTCAAAATGGTGTGGCCAGAGGAAAAGCAAGCATTATTAAAT
ATGAATGCAATCCTTACAAACACAAATTGAACCTTTTTTTCTCCCCAGAAAAAAAGCTAG
TCCAAAAAAAGGTCTCATTCTCTGAAGATTTATCATTTCCAAATCACAGTGAAAGGAACT
TGAGTAATTAACTAATTTTGTTTTCTACTATGTGCCTTAAGGATACCTCACTAAAAACTG
GTATCTGACACAAGAGAATGACATATGAAGAATGTAATATTGTAGTGACAGTACTGAGGT
TGATCGTTACATACATATTTAAACACTGAGTATTAAATGCTTACATCCTAATTGATATAG
AACATTGGTCCAATAACAAAAATAGAGAACAGTAGCTGGAAATTTATCTCATTCAATGTT
CAGAGATAAAAGGGTTAACCATCCTTTCCATTATTTTCTGCAGATAAGTCCTTTCTTTCA
TATTTAAATCTGCTGGCAACTGAATTCTGACATTTTTCCAAGCTACTGTATGAAGAGGAT
GCTGAAGGCCATCACAACACAGCATACTGCAACATAAGGACTCTTGCGTTCACCAATTCT
AGCACACTTCCAAAATATACCCAACAATCCAGTTTTATTTCTGTCCAGGAGGCTGGGTGC
CAAGGATCGGATATAAGCACAGGTACATATAAGCAGCAAGATTACAGTCAACAGACTCTG
AAAGTTGAAAATGGCAGACATAGTGAGGCCGGCGAAGCCCCAGCCACATCACTCTTCCGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q5RAL1_PONPY

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5RAL1_PONPY

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               34-135, gnl|bosTau2|chr7 (13836993-13836892)
               

               
               34-135, gnl|Hg17|chrY (21406405-21406521)
               

               
               34-135, gnl|Mm7|chr4 (140733906-140734008)
               


               
               464-1252, gnl|bosTau2|chr12 (20476556-20475808)
               

               
               464-1252, gnl|Hg17|chrY (21406841-21407605)
               

               
               464-1252, gnl|Mm7|chr14 (73502392-73501686)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               34-135, gnl|bosTau2|chr7 (13836993-13836892)
               

               
               34-135, gnl|Hg17|chrY (21406405-21406521)
               

               
               34-135, gnl|Mm7|chr4 (140733906-140734008)
               


               
               464-1252, gnl|bosTau2|chr12 (20476556-20475808)
               

               
               464-1252, gnl|Hg17|chrY (21406841-21407605)
               

               
               464-1252, gnl|Mm7|chr14 (73502392-73501686)

Expressed library(ies): 39 entry(ies)

More info

Expressed library(ies): 39 entry(ies)

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               aor (0.585823)
               

               
               liv (0.585137)
               

               
               nca (0.547495)
               

               
               sug (0.509165)
               

               
               tra (0.492368)
               

               
               fco (0.471624)
               

               
               lin (0.436808)
               

               
               amn (0.417711)
               

               
               fty (0.351679)
               

               
               fbs (0.350693)
               

               
               sin (0.349895)
               

               
               duo (0.345602)
               

               
               vin (0.332557)
               

               
               cty (0.31224)
               

               
               sme (0.305437)
               

               
               isp (0.300752)
               

               
               fat (0.294855)
               

               
               spl (0.286369)
               

               
               kid (0.259471)
               

               
               ret (0.257467)
               

               
               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               nms (0.213858)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               ski (0.146735)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

Expressed library(ies): 39 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.585823)
               

               
               liv (0.585137)
               

               
               nca (0.547495)
               

               
               sug (0.509165)
               

               
               tra (0.492368)
               

               
               fco (0.471624)
               

               
               lin (0.436808)
               

               
               amn (0.417711)
               

               
               fty (0.351679)
               

               
               fbs (0.350693)
               

               
               sin (0.349895)
               

               
               duo (0.345602)
               

               
               vin (0.332557)
               

               
               cty (0.31224)
               

               
               sme (0.305437)
               

               
               isp (0.300752)
               

               
               fat (0.294855)
               

               
               spl (0.286369)
               

               
               kid (0.259471)
               

               
               ret (0.257467)
               

               
               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               nms (0.213858)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               ski (0.146735)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

	34-135, gnl\|bosTau2\|chr7 (13836993-13836892)
	34-135, gnl\|Hg17\|chrY (21406405-21406521)
	34-135, gnl\|Mm7\|chr4 (140733906-140734008)

	464-1252, gnl\|bosTau2\|chr12 (20476556-20475808)
	464-1252, gnl\|Hg17\|chrY (21406841-21407605)
	464-1252, gnl\|Mm7\|chr14 (73502392-73501686)

	aor (0.585823)
	liv (0.585137)
	nca (0.547495)
	sug (0.509165)
	tra (0.492368)
	fco (0.471624)
	lin (0.436808)
	amn (0.417711)
	fty (0.351679)
	fbs (0.350693)
	sin (0.349895)
	duo (0.345602)
	vin (0.332557)
	cty (0.31224)
	sme (0.305437)
	isp (0.300752)
	fat (0.294855)
	spl (0.286369)
	kid (0.259471)
	ret (0.257467)
	mgp (0.230681)
	spc (0.226732)
	nms (0.213858)
	tes (0.207814)
	fcc (0.197785)
	rec (0.17307)
	mcp (0.170648)
	nco (0.161734)
	mga (0.160205)
	ski (0.146735)
	pty (0.142714)
	lnt (0.142308)
	che (0.136314)
	lyg (0.133103)
	ova (0.129132)
	bla (0.124347)
	eru (0.120048)
	med (0.116252)
	eje (0.0988338)