Non-Coding RNA Search

Ss1.1-Mixc-0042,i08.5

Sequence:


               
               AGTTCGCCCACTAAGCAGAAGAAAGATCAAAAAACGGAAAAGAGGGGACGAGCAAACAGG
CGCTTTCAAGAACAAGCCCCTCATCTCCAAGAGGACAGCGCCCTAGGAACCCAAATTCAG
TGCCTACCGAAGACAAAGGCTGCCCGAGGGAGCGGCGGCGCGACCCCGGGGCTTGGGCCC
TGCCGCGGAGCCCGCACGGCCCGACTGCCTGGACGGTCGCGGACCATGTCTCCCGCCCCG
CGACCCGTCCGCAGTCTGCTGCTCCCCCTGCTCACGCTCGCCTCCGCGCTCGCCTCCCTC
AGCTCTGCCCAAAGCTTCAGCCCCGAAGCCTGGCTGCAGCAGTATGGCTACCTGCCCCCT
GGGGACCTGCGTACCCACACACAGCGCTCGCCCCAGTCACTCTCAGCTGCCATTGCTGCC
ATGCAGAGGTTCTACGGTCTGCGAGTGACAGGCAAGGCTGATGCAGACACCATGAAGGCC
ATGAGGCGCCCCCGCTGTGGTGTTCCAGACAAGTTCGGGGCTGAGATCAAGGCCAATGTT
CGAAGGAAGCGCTATGCCATCCAGGGCCTCAAATGGCAGCATAACGAGATCACTTTCTGC
ATCCAGAACTACACCCCCAAGGTGGGCGAATATGCCACATTCGAGGCCATCCGCAAGGCG
TTCCGCGTGTGGGAGAGTGCCACGCCGCTGCGCTTCCGAGAGGTACCCTATGCCTACATC
CGTGAGGGCCACGAGAAGCAGGCGGACATCATGATCTTCTTTGCTGAAGGTTTCCATGGT
GACAGCACGCCTTTCGATGGCGAGGGTGGCTTCCTGGCCCATGCCTACTTCCCAGGCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTTCGCCCACTAAGCAGAAGAAAGATCAAAAAACGGAAAAGAGGGGACGAGCAAACAGG
CGCTTTCAAGAACAAGCCCCTCATCTCCAAGAGGACAGCGCCCTAGGAACCCAAATTCAG
TGCCTACCGAAGACAAAGGCTGCCCGAGGGAGCGGCGGCGCGACCCCGGGGCTTGGGCCC
TGCCGCGGAGCCCGCACGGCCCGACTGCCTGGACGGTCGCGGACCATGTCTCCCGCCCCG
CGACCCGTCCGCAGTCTGCTGCTCCCCCTGCTCACGCTCGCCTCCGCGCTCGCCTCCCTC
AGCTCTGCCCAAAGCTTCAGCCCCGAAGCCTGGCTGCAGCAGTATGGCTACCTGCCCCCT
GGGGACCTGCGTACCCACACACAGCGCTCGCCCCAGTCACTCTCAGCTGCCATTGCTGCC
ATGCAGAGGTTCTACGGTCTGCGAGTGACAGGCAAGGCTGATGCAGACACCATGAAGGCC
ATGAGGCGCCCCCGCTGTGGTGTTCCAGACAAGTTCGGGGCTGAGATCAAGGCCAATGTT
CGAAGGAAGCGCTATGCCATCCAGGGCCTCAAATGGCAGCATAACGAGATCACTTTCTGC
ATCCAGAACTACACCCCCAAGGTGGGCGAATATGCCACATTCGAGGCCATCCGCAAGGCG
TTCCGCGTGTGGGAGAGTGCCACGCCGCTGCGCTTCCGAGAGGTACCCTATGCCTACATC
CGTGAGGGCCACGAGAAGCAGGCGGACATCATGATCTTCTTTGCTGAAGGTTTCCATGGT
GACAGCACGCCTTTCGATGGCGAGGGTGGCTTCCTGGCCCATGCCTACTTCCCAGGCCCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               199-315, - strand, RNAz p=0.69395

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               199-315, - strand, RNAz p=0.69395

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-328, gnl|bosTau2|chr10 (14168367-14168037)
               

               
               1-328, gnl|canFam2|chr8 (6186623-6187065)
               

               
               1-328, gnl|echTel1|scaffold_284441 (1480-988)
               

               
               1-328, gnl|hg17|chr14 (22375641-22376095)
               

               
               1-328, gnl|Hg17|chr14 (22375641-22375975)
               

               
               1-328, gnl|mm7|chr14 (49298671-49299118)
               

               
               1-328, gnl|Mm7|chr14 (49298671-49298997)
               

               
               1-328, gnl|monDom2|scaffold_12 (27040649-27040144)
               

               
               1-328, gnl|oryCun1|scaffold_207495 (141862-142297)
               

               
               1-328, gnl|panTro1|chr15 (21298164-21298619)
               

               
               1-328, gnl|rheMac2|chr7 (85649066-85649518)
               

               
               1-328, gnl|rn3|chr15 (32509497-32509944)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-328, gnl|bosTau2|chr10 (14168367-14168037)
               

               
               1-328, gnl|canFam2|chr8 (6186623-6187065)
               

               
               1-328, gnl|echTel1|scaffold_284441 (1480-988)
               

               
               1-328, gnl|hg17|chr14 (22375641-22376095)
               

               
               1-328, gnl|Hg17|chr14 (22375641-22375975)
               

               
               1-328, gnl|mm7|chr14 (49298671-49299118)
               

               
               1-328, gnl|Mm7|chr14 (49298671-49298997)
               

               
               1-328, gnl|monDom2|scaffold_12 (27040649-27040144)
               

               
               1-328, gnl|oryCun1|scaffold_207495 (141862-142297)
               

               
               1-328, gnl|panTro1|chr15 (21298164-21298619)
               

               
               1-328, gnl|rheMac2|chr7 (85649066-85649518)
               

               
               1-328, gnl|rn3|chr15 (32509497-32509944)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.267344)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)

	1-328, gnl\|bosTau2\|chr10 (14168367-14168037)
	1-328, gnl\|canFam2\|chr8 (6186623-6187065)
	1-328, gnl\|echTel1\|scaffold_284441 (1480-988)
	1-328, gnl\|hg17\|chr14 (22375641-22376095)
	1-328, gnl\|Hg17\|chr14 (22375641-22375975)
	1-328, gnl\|mm7\|chr14 (49298671-49299118)
	1-328, gnl\|Mm7\|chr14 (49298671-49298997)
	1-328, gnl\|monDom2\|scaffold_12 (27040649-27040144)
	1-328, gnl\|oryCun1\|scaffold_207495 (141862-142297)
	1-328, gnl\|panTro1\|chr15 (21298164-21298619)
	1-328, gnl\|rheMac2\|chr7 (85649066-85649518)
	1-328, gnl\|rn3\|chr15 (32509497-32509944)