Non-Coding RNA Search

Ss1.1-Mixc-0042,i16.5

Sequence:


               
               AGCTGGCNTCAGCATCTTCTCACCCATCCCCAAGTCTCCCAGCTTCCCTATCATACAGGA
CTCCATGCTGAAAGGCAAACTGGGTGTACCAGAGCTTCGGGTTGGACGCCTCATGAACCG
TTCCATCTCCTGCACCATGAAGAACCCCAAAGTGGAGGTGTTTGGCTACCCTCCCAGCCC
CCAGGTCAGTGGTCACTGCAAGAACATCCCCACTCTGGAATATGGATTCCTTGTTCAGAT
CATGAAATATGCAGAGCAGAGGATTCCAACATTGAATGAGTACTGTGTAGTGTGTGATGA
GCAGCATGTCTTTCAGAATGGGTCAATGCTCAAGCCAGCTGTTTGTACTCGCGAACTGTG
TGTTTTCTCCTTCTACACATTGGGAGTCATGTCTGGAGCTGCAGAGGAGGTGGCCACTGG
AGCAGAGGTGGTGGATCTGCTGGTGGCCATGTGTAGGGCAGCTCTGGAGTCCCCTAGAAA
GAGCATCATCTTTGAGCCTTATCCTTCTGTGGTGGACCCCACTGATCCCAAGACTCTGGC
CTTTAACCCTAAGAAGAAGAATTATGAGCGACTTCAAAAAGCTCTGGATAGTGTGATGTC
CATCCGGGAGATGACCCAGGGCTCATATCTGGAAATCAAGAAGCAGATGGACAAGCTGGA
TCCCCTGGCCCATCCTCTCCTGCAGTGGATCATCTCTAGCAACAGGTCACACATTGTCAA
ACTACCTCTCAGCAGGCTGAAGTTCATGCACACCTCACACCAGTTCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCTGGCNTCAGCATCTTCTCACCCATCCCCAAGTCTCCCAGCTTCCCTATCATACAGGA
CTCCATGCTGAAAGGCAAACTGGGTGTACCAGAGCTTCGGGTTGGACGCCTCATGAACCG
TTCCATCTCCTGCACCATGAAGAACCCCAAAGTGGAGGTGTTTGGCTACCCTCCCAGCCC
CCAGGTCAGTGGTCACTGCAAGAACATCCCCACTCTGGAATATGGATTCCTTGTTCAGAT
CATGAAATATGCAGAGCAGAGGATTCCAACATTGAATGAGTACTGTGTAGTGTGTGATGA
GCAGCATGTCTTTCAGAATGGGTCAATGCTCAAGCCAGCTGTTTGTACTCGCGAACTGTG
TGTTTTCTCCTTCTACACATTGGGAGTCATGTCTGGAGCTGCAGAGGAGGTGGCCACTGG
AGCAGAGGTGGTGGATCTGCTGGTGGCCATGTGTAGGGCAGCTCTGGAGTCCCCTAGAAA
GAGCATCATCTTTGAGCCTTATCCTTCTGTGGTGGACCCCACTGATCCCAAGACTCTGGC
CTTTAACCCTAAGAAGAAGAATTATGAGCGACTTCAAAAAGCTCTGGATAGTGTGATGTC
CATCCGGGAGATGACCCAGGGCTCATATCTGGAAATCAAGAAGCAGATGGACAAGCTGGA
TCCCCTGGCCCATCCTCTCCTGCAGTGGATCATCTCTAGCAACAGGTCACACATTGTCAA
ACTACCTCTCAGCAGGCTGAAGTTCATGCACACCTCACACCAGTTCCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61879275|ref|XP_588643.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61879275|ref|XP_588643.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               426-553, + strand, RNAz p=0.756739

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               426-553, + strand, RNAz p=0.756739

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               426-553, gnl|bosTau2|chr10 (10634046-10633919)
               

               
               426-553, gnl|Hg17|chr15 (70335987-70335860)
               

               
               426-553, gnl|Mm7|chr9 (59661781-59661908)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               426-553, gnl|bosTau2|chr10 (10634046-10633919)
               

               
               426-553, gnl|Hg17|chr15 (70335987-70335860)
               

               
               426-553, gnl|Mm7|chr9 (59661781-59661908)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.236602)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.236602)

	426-553, gnl\|bosTau2\|chr10 (10634046-10633919)
	426-553, gnl\|Hg17\|chr15 (70335987-70335860)
	426-553, gnl\|Mm7\|chr9 (59661781-59661908)