Non-Coding RNA Search

Ss1.1-Mixc-0042,k21.5

Sequence:


               
               GGCTATTTAAAAGGATGTCATCTTTTGAGTTAAAAAAAATACAAATAAAGTCTTCTTTGC
ATTGAGTTATTTAAATTTGTTTCCCAGTACCTTTTCTTTCCAACAGGTCATGGATATTAG
TCATGGCTAATATCCCTCAGTTGACTTAGTCTTTAACCATCATTACCAAATGCTCTAGGA
GCCACATGTCTGTCCTTAATCTAATGGATCCCTTATTTAACCAGCGACTGTTGTCTGTTG
GCACATCAAAATAGAATCTGTTGCTAGTAAAGTACTAACATGTGCTTATTTATCCTTACT
CTTCTATTCTCCAGGTTATTTTTTCAAATGCTCTTTGAGAGGAAGCCTAGTATTGCATAA
AGGAAAGTAGCTGAAAGAACAATTTGGGGGCCATAGGTCTGTCATTAAATATGGCTCTTC
CTCTTAGGAGGCTTATAAATCCTCTGTGCCTCACAGGGCTCATTTCAGGCCCAAAGGAGG
ACATATATAGAAATTGGTTTGTAAATGATGTTCCATTTCATATGCTGACACAGTTATCCC
AATCTCACAGTCATATATTTTCACAATCACTTGTGAAAAGAAGTGCCATAGCAGGGACAA
AACAAATTTTAGCAGAGCTTTTGGAAGTTTTAAATGGGTAGTTGGCTTGTGGTCACTGTA
CTTCATTGAAAATGCTTAATATATTTCAAGTTATTGAAAAAGATAGGAGTTCTATTTCAT
TTTGTATGTCACCTTGTATTACTTTCAAGGAGTCTAATTACGTCCTAGATAGTATATTAC
AATTTGGTCAAAACCCTCCTTGTATAAATAGGGCTTTTGTGTCCATAGCCTTGTAAAAGA
TACTGACTGTATCTGAAGTTGAAGATAAGTATGTTATCCTGCTTAATATGTTAAAAGCAT
AATGTGCTGACAACACTGAAGTGCATCACTATATTCTAATGGTCCACCTTTAAACGACAT
CCTCATTTTTAGGCTAAGCACATTTGATTGTTTTGTCTGTCATCTACTCAGATCTCTGTT
TTGTCTAGTGCTATGAATGTAAATTAAAACCCTAAACATGGAGTTTTTAATTCTCTGTGC
CCCTGAATAGACTGTGATGCCTGACAAACTCTGTTAGGTCATTATTTTATCGTACCAAAG
TTCTAGTAGCTTCAGAAATGATAGCATCCAATGATTTTGTGGTGTCTGGGTTTGAATACT
AGGGTTGAGATCTGTGTTCAGTGATCGTTTCTGCAGACTTTTCAAATAAAAATGCATTTT
TATCAATTAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTATTTAAAAGGATGTCATCTTTTGAGTTAAAAAAAATACAAATAAAGTCTTCTTTGC
ATTGAGTTATTTAAATTTGTTTCCCAGTACCTTTTCTTTCCAACAGGTCATGGATATTAG
TCATGGCTAATATCCCTCAGTTGACTTAGTCTTTAACCATCATTACCAAATGCTCTAGGA
GCCACATGTCTGTCCTTAATCTAATGGATCCCTTATTTAACCAGCGACTGTTGTCTGTTG
GCACATCAAAATAGAATCTGTTGCTAGTAAAGTACTAACATGTGCTTATTTATCCTTACT
CTTCTATTCTCCAGGTTATTTTTTCAAATGCTCTTTGAGAGGAAGCCTAGTATTGCATAA
AGGAAAGTAGCTGAAAGAACAATTTGGGGGCCATAGGTCTGTCATTAAATATGGCTCTTC
CTCTTAGGAGGCTTATAAATCCTCTGTGCCTCACAGGGCTCATTTCAGGCCCAAAGGAGG
ACATATATAGAAATTGGTTTGTAAATGATGTTCCATTTCATATGCTGACACAGTTATCCC
AATCTCACAGTCATATATTTTCACAATCACTTGTGAAAAGAAGTGCCATAGCAGGGACAA
AACAAATTTTAGCAGAGCTTTTGGAAGTTTTAAATGGGTAGTTGGCTTGTGGTCACTGTA
CTTCATTGAAAATGCTTAATATATTTCAAGTTATTGAAAAAGATAGGAGTTCTATTTCAT
TTTGTATGTCACCTTGTATTACTTTCAAGGAGTCTAATTACGTCCTAGATAGTATATTAC
AATTTGGTCAAAACCCTCCTTGTATAAATAGGGCTTTTGTGTCCATAGCCTTGTAAAAGA
TACTGACTGTATCTGAAGTTGAAGATAAGTATGTTATCCTGCTTAATATGTTAAAAGCAT
AATGTGCTGACAACACTGAAGTGCATCACTATATTCTAATGGTCCACCTTTAAACGACAT
CCTCATTTTTAGGCTAAGCACATTTGATTGTTTTGTCTGTCATCTACTCAGATCTCTGTT
TTGTCTAGTGCTATGAATGTAAATTAAAACCCTAAACATGGAGTTTTTAATTCTCTGTGC
CCCTGAATAGACTGTGATGCCTGACAAACTCTGTTAGGTCATTATTTTATCGTACCAAAG
TTCTAGTAGCTTCAGAAATGATAGCATCCAATGATTTTGTGGTGTCTGGGTTTGAATACT
AGGGTTGAGATCTGTGTTCAGTGATCGTTTCTGCAGACTTTTCAAATAAAAATGCATTTT
TATCAATTAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1265, gnl|bosTau2|chr24 (35369820-35368562)
               

               
               1-1265, gnl|Hg17|chr18 (50712471-50713742)
               

               
               1-1265, gnl|Mm7|chr18 (70371961-70370798)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1265, gnl|bosTau2|chr24 (35369820-35368562)
               

               
               1-1265, gnl|Hg17|chr18 (50712471-50713742)
               

               
               1-1265, gnl|Mm7|chr18 (70371961-70370798)

Expressed library(ies): 13 entry(ies)

More info

Expressed library(ies): 13 entry(ies)

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               pro (0.512033)
               

               
               sug (0.509165)
               

               
               sag (0.36543)
               

               
               mga (0.32041)
               

               
               lyg (0.266205)
               

               
               cty (0.20816)
               

               
               aor (0.195274)
               

               
               mcp (0.170648)
               

               
               hyp (0.142837)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               eru (0.120048)
               

               
               jej (0.0989218)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               sug (0.509165)
               

               
               sag (0.36543)
               

               
               mga (0.32041)
               

               
               lyg (0.266205)
               

               
               cty (0.20816)
               

               
               aor (0.195274)
               

               
               mcp (0.170648)
               

               
               hyp (0.142837)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               eru (0.120048)
               

               
               jej (0.0989218)

	1-1265, gnl\|bosTau2\|chr24 (35369820-35368562)
	1-1265, gnl\|Hg17\|chr18 (50712471-50713742)
	1-1265, gnl\|Mm7\|chr18 (70371961-70370798)

	pro (0.512033)
	sug (0.509165)
	sag (0.36543)
	mga (0.32041)
	lyg (0.266205)
	cty (0.20816)
	aor (0.195274)
	mcp (0.170648)
	hyp (0.142837)
	ova (0.129132)
	ret (0.128733)
	eru (0.120048)
	jej (0.0989218)