Ss1.1-Mixc-0042,l03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGCGTGAAGAGGCTGAAGTTCCCTGTTCCCCACGAATTCCAGTGCCTGTGGGTCCCGTG ACCCAACAGCATGAAGGAAACACCACTCTCAAACTGCGAGCGCCGCTTTCTACTTCGCGC CATCGAAGAGAAGAAGCGGCTGGATGGCAGGCAAACCTATGATTATAGGAACATCAAGAT CTCGTTTGGAACAGATTATGGGTGCTGCATTGTGGAACTTGGAAAAACAAGAGTGCTTGG ACAGGTTTCCTGTGAACTTGTTTCTCCAAAACTCAATAGGGCAACAGAAGGTATTCTTTT TTTTAACCTTGAACTCTCTCAGATGGCTGCCCCAGCTTTTGAACCTGGAAGGCAGTCAGA TCTCTTGGTGAAGTTGAATCGCCTCTTGGAAAGATGTCTAAGAAATTCGAAGTGTATAGA CACTGAATCTCTCTGTGTTGTTGCTGGTGAAAAGGTTTGGCAAATACGTGTGGACCTACA TTTATTAAATCATGATGGAAATATTATTGATGCTGCCAGCATTGCTGCAATTGTAGCCTT ATGTCACTTCCGAAGGCCTGATGTCTCTGTCCAAGGAGATGAAGTAACACTGTACACACC TGAGGAACGTGACCCTGTACCATTGAGCATCCACCACATGCCCATTTGTGTCAGTTTTGC CTTCTTTCAGCAAGGGACATATTTATTGGTGGATCCCAATGAACGAGAAGAACGTGTAAT GGATGGCTTGCTGGTGATTGCCATGAATAAGCATCGAGAGATTTGTACCATCCAATCCAG TGGTGGGATAATGCTGCTAAAAGATCAGGTTTTGAGGTGTAGTAAAATAGCTGGTGTGAA AGTTCTGGAAATTACAGAGCTAATACAGAAAGCTTTGGAGAACGACCAGAAAGTTAGGAA AGAAGGCGGAAAGTTTGGTTTTGCGGAGTCTATAGCAAATCAAAGAATCACAGCATTTAA AATGGAAAAGGCCCCTATTGATACTTCCGATGTAGAGGAGAAAGCAGAAGAAATCATTTC TGAAGCTGAACCTCCTTTAGAAGTTGTTTCTAAACCTGTGCTGTGGACTCCTGGAACTGC CCAGATTGGAGAGGGAATAGAAAACTCCTGGGGTGATCTTGAAGACTCTGAGAAGGAAGA TGAGGATGAAGGTGGCAGTGATGAAGCTATCATTCTTGATAGTATAAAAACGGACACTGG AGTAGAAATCTCTAATATTGGAAGCCAAGATGCCCCAATTGTACTCTCAGACAGTGAAGA AGAAGAAATGATCATCTTAGAACCAGATAAGAACCCAAAGAAAATAAGAACACAGACCAT CCATGCAACACAAGAAAAAGGACCAAGTAAAAAACCAGTGAAAAAGAGAAAAAAGAAGAG AACTGCTAATTAAAGTACACATAGTTGTATATTTTGTGTATATAACTATTAAAAAGGTAT TTATTCAGTGTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGCGTGAAGAGGCTGAAGTTCCCTGTTCCCCACGAATTCCAGTGCCTGTGGGTCCCGTG ACCCAACAGCATGAAGGAAACACCACTCTCAAACTGCGAGCGCCGCTTTCTACTTCGCGC CATCGAAGAGAAGAAGCGGCTGGATGGCAGGCAAACCTATGATTATAGGAACATCAAGAT CTCGTTTGGAACAGATTATGGGTGCTGCATTGTGGAACTTGGAAAAACAAGAGTGCTTGG ACAGGTTTCCTGTGAACTTGTTTCTCCAAAACTCAATAGGGCAACAGAAGGTATTCTTTT TTTTAACCTTGAACTCTCTCAGATGGCTGCCCCAGCTTTTGAACCTGGAAGGCAGTCAGA TCTCTTGGTGAAGTTGAATCGCCTCTTGGAAAGATGTCTAAGAAATTCGAAGTGTATAGA CACTGAATCTCTCTGTGTTGTTGCTGGTGAAAAGGTTTGGCAAATACGTGTGGACCTACA TTTATTAAATCATGATGGAAATATTATTGATGCTGCCAGCATTGCTGCAATTGTAGCCTT ATGTCACTTCCGAAGGCCTGATGTCTCTGTCCAAGGAGATGAAGTAACACTGTACACACC TGAGGAACGTGACCCTGTACCATTGAGCATCCACCACATGCCCATTTGTGTCAGTTTTGC CTTCTTTCAGCAAGGGACATATTTATTGGTGGATCCCAATGAACGAGAAGAACGTGTAAT GGATGGCTTGCTGGTGATTGCCATGAATAAGCATCGAGAGATTTGTACCATCCAATCCAG TGGTGGGATAATGCTGCTAAAAGATCAGGTTTTGAGGTGTAGTAAAATAGCTGGTGTGAA AGTTCTGGAAATTACAGAGCTAATACAGAAAGCTTTGGAGAACGACCAGAAAGTTAGGAA AGAAGGCGGAAAGTTTGGTTTTGCGGAGTCTATAGCAAATCAAAGAATCACAGCATTTAA AATGGAAAAGGCCCCTATTGATACTTCCGATGTAGAGGAGAAAGCAGAAGAAATCATTTC TGAAGCTGAACCTCCTTTAGAAGTTGTTTCTAAACCTGTGCTGTGGACTCCTGGAACTGC CCAGATTGGAGAGGGAATAGAAAACTCCTGGGGTGATCTTGAAGACTCTGAGAAGGAAGA TGAGGATGAAGGTGGCAGTGATGAAGCTATCATTCTTGATAGTATAAAAACGGACACTGG AGTAGAAATCTCTAATATTGGAAGCCAAGATGCCCCAATTGTACTCTCAGACAGTGAAGA AGAAGAAATGATCATCTTAGAACCAGATAAGAACCCAAAGAAAATAAGAACACAGACCAT CCATGCAACACAAGAAAAAGGACCAAGTAAAAAACCAGTGAAAAAGAGAAAAAAGAAGAG AACTGCTAATTAAAGTACACATAGTTGTATATTTTGTGTATATAACTATTAAAAAGGTAT TTATTCAGTGTT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 61 entry(ies) | More info |
| Aligned organism(s): 61 entry(ies) | Help | Less info |
| 1-136, gnl|bosTau2|chr6 (882273-882138) | |
| 1-136, gnl|Hg17|chr4 (123080116-123080250) | |
| 1-136, gnl|Mm7|chr3 (36363419-36363532) | |
| 230-366, gnl|bosTau2|chr6 (881068-880932) | |
| 230-366, gnl|canFam2|chr19 (21343318-21343182) | |
| 230-366, gnl|danRer3|chr1 (15096031-15096142) | |
| 230-366, gnl|dasNov1|scaffold_49660 (4963-4827) | |
| 230-366, gnl|echTel1|scaffold_284129 (2246-2382) | |
| 230-366, gnl|fr1|chrUn (194724607-194724737) | |
| 230-366, gnl|galGal2|chr4 (54481804-54481657) | |
| 230-366, gnl|hg17|chr4 (123081421-123081557) | |
| 230-366, gnl|Hg17|chr4 (123081432-123081568) | |
| 230-366, gnl|loxAfr1|scaffold_923 (80259-80123) | |
| 230-366, gnl|mm7|chr3 (36364574-36364710) | |
| 230-366, gnl|Mm7|chr3 (36364585-36364721) | |
| 230-366, gnl|monDom2|scaffold_32 (5536292-5536156) | |
| 230-366, gnl|oryCun1|scaffold_203692 (143163-143027) | |
| 230-366, gnl|panTro1|chr3 (139915913-139916049) | |
| 230-366, gnl|rheMac2|chr5 (114170744-114170880) | |
| 230-366, gnl|rn3|chr2 (122997664-122997801) | |
| 230-366, gnl|tetNig1|chrUn_random (8097159-8097032) | |
| 453-592, gnl|bosTau2|chr6 (879816-879677) | |
| 453-592, gnl|canFam2|chr19 (21342083-21341911) | |
| 453-592, gnl|danRer3|chr1 (15098179-15098357) | |
| 453-592, gnl|dasNov1|scaffold_49660 (3732-3560) | |
| 453-592, gnl|echTel1|scaffold_284129 (3494-3666) | |
| 453-592, gnl|fr1|chrUn (194725022-194725175) | |
| 453-592, gnl|galGal2|chr4 (54480888-54480730) | |
| 453-592, gnl|hg17|chr4 (123083360-123083532) | |
| 453-592, gnl|Hg17|chr4 (123083380-123083519) | |
| 453-592, gnl|loxAfr1|scaffold_923 (77715-77543) | |
| 453-592, gnl|mm7|chr3 (36365397-36365569) | |
| 453-592, gnl|Mm7|chr3 (36365417-36365556) | |
| 453-592, gnl|monDom2|scaffold_32 (5534831-5534657) | |
| 453-592, gnl|oryCun1|scaffold_203692 (141317-141145) | |
| 453-592, gnl|panTro1|chr3 (139917845-139918017) | |
| 453-592, gnl|rheMac2|chr5 (114172626-114172798) | |
| 453-592, gnl|rn3|chr2 (122998584-122998756) | |
| 453-592, gnl|tetNig1|chrUn_random (8096785-8096632) | |
| 453-592, gnl|xenTro1|scaffold_520 (932712-932864) | |
| 664-810, gnl|bosTau2|chr6 (875038-874892) | |
| 664-810, gnl|canFam2|chr19 (21338881-21338692) | |
| 664-810, gnl|danRer3|chr1 (15100054-15100236) | |
| 664-810, gnl|dasNov1|scaffold_18711 (42557-42368) | |
| 664-810, gnl|echTel1|scaffold_117580 (418-250) | |
| 664-810, gnl|fr1|chrUn (194725544-194725681) | |
| 664-810, gnl|galGal2|chr4 (54480038-54479870) | |
| 664-810, gnl|hg17|chr4 (123088697-123088886) | |
| 664-810, gnl|Hg17|chr4 (123088715-123088861) | |
| 664-810, gnl|loxAfr1|scaffold_923 (74533-74354) | |
| 664-810, gnl|mm7|chr3 (36367614-36367803) | |
| 664-810, gnl|Mm7|chr3 (36367632-36367778) | |
| 664-810, gnl|monDom2|scaffold_32 (5532485-5532311) | |
| 664-810, gnl|oryCun1|scaffold_203692 (135945-135756) | |
| 664-810, gnl|panTro1|chr3 (139923167-139923356) | |
| 664-810, gnl|rheMac2|chr5 (114178037-114178226) | |
| 664-810, gnl|rn3|chr2 (123000907-123001095) | |
| 664-810, gnl|tetNig1|chrUn_random (8096407-8096241) | |
| 664-810, gnl|xenTro1|scaffold_520 (934011-934195) | |
| 1031-1448, gnl|bosTau2|chr6 (42968509-42968105) | |
| 1031-1448, gnl|Hg17|chr4 (123092637-123095669) |
| Aligned organism(s): 61 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-136, gnl|bosTau2|chr6 (882273-882138) | |
| 1-136, gnl|Hg17|chr4 (123080116-123080250) | |
| 1-136, gnl|Mm7|chr3 (36363419-36363532) | |
| 230-366, gnl|bosTau2|chr6 (881068-880932) | |
| 230-366, gnl|canFam2|chr19 (21343318-21343182) | |
| 230-366, gnl|danRer3|chr1 (15096031-15096142) | |
| 230-366, gnl|dasNov1|scaffold_49660 (4963-4827) | |
| 230-366, gnl|echTel1|scaffold_284129 (2246-2382) | |
| 230-366, gnl|fr1|chrUn (194724607-194724737) | |
| 230-366, gnl|galGal2|chr4 (54481804-54481657) | |
| 230-366, gnl|hg17|chr4 (123081421-123081557) | |
| 230-366, gnl|Hg17|chr4 (123081432-123081568) | |
| 230-366, gnl|loxAfr1|scaffold_923 (80259-80123) | |
| 230-366, gnl|mm7|chr3 (36364574-36364710) | |
| 230-366, gnl|Mm7|chr3 (36364585-36364721) | |
| 230-366, gnl|monDom2|scaffold_32 (5536292-5536156) | |
| 230-366, gnl|oryCun1|scaffold_203692 (143163-143027) | |
| 230-366, gnl|panTro1|chr3 (139915913-139916049) | |
| 230-366, gnl|rheMac2|chr5 (114170744-114170880) | |
| 230-366, gnl|rn3|chr2 (122997664-122997801) | |
| 230-366, gnl|tetNig1|chrUn_random (8097159-8097032) | |
| 453-592, gnl|bosTau2|chr6 (879816-879677) | |
| 453-592, gnl|canFam2|chr19 (21342083-21341911) | |
| 453-592, gnl|danRer3|chr1 (15098179-15098357) | |
| 453-592, gnl|dasNov1|scaffold_49660 (3732-3560) | |
| 453-592, gnl|echTel1|scaffold_284129 (3494-3666) | |
| 453-592, gnl|fr1|chrUn (194725022-194725175) | |
| 453-592, gnl|galGal2|chr4 (54480888-54480730) | |
| 453-592, gnl|hg17|chr4 (123083360-123083532) | |
| 453-592, gnl|Hg17|chr4 (123083380-123083519) | |
| 453-592, gnl|loxAfr1|scaffold_923 (77715-77543) | |
| 453-592, gnl|mm7|chr3 (36365397-36365569) | |
| 453-592, gnl|Mm7|chr3 (36365417-36365556) | |
| 453-592, gnl|monDom2|scaffold_32 (5534831-5534657) | |
| 453-592, gnl|oryCun1|scaffold_203692 (141317-141145) | |
| 453-592, gnl|panTro1|chr3 (139917845-139918017) | |
| 453-592, gnl|rheMac2|chr5 (114172626-114172798) | |
| 453-592, gnl|rn3|chr2 (122998584-122998756) | |
| 453-592, gnl|tetNig1|chrUn_random (8096785-8096632) | |
| 453-592, gnl|xenTro1|scaffold_520 (932712-932864) | |
| 664-810, gnl|bosTau2|chr6 (875038-874892) | |
| 664-810, gnl|canFam2|chr19 (21338881-21338692) | |
| 664-810, gnl|danRer3|chr1 (15100054-15100236) | |
| 664-810, gnl|dasNov1|scaffold_18711 (42557-42368) | |
| 664-810, gnl|echTel1|scaffold_117580 (418-250) | |
| 664-810, gnl|fr1|chrUn (194725544-194725681) | |
| 664-810, gnl|galGal2|chr4 (54480038-54479870) | |
| 664-810, gnl|hg17|chr4 (123088697-123088886) | |
| 664-810, gnl|Hg17|chr4 (123088715-123088861) | |
| 664-810, gnl|loxAfr1|scaffold_923 (74533-74354) | |
| 664-810, gnl|mm7|chr3 (36367614-36367803) | |
| 664-810, gnl|Mm7|chr3 (36367632-36367778) | |
| 664-810, gnl|monDom2|scaffold_32 (5532485-5532311) | |
| 664-810, gnl|oryCun1|scaffold_203692 (135945-135756) | |
| 664-810, gnl|panTro1|chr3 (139923167-139923356) | |
| 664-810, gnl|rheMac2|chr5 (114178037-114178226) | |
| 664-810, gnl|rn3|chr2 (123000907-123001095) | |
| 664-810, gnl|tetNig1|chrUn_random (8096407-8096241) | |
| 664-810, gnl|xenTro1|scaffold_520 (934011-934195) | |
| 1031-1448, gnl|bosTau2|chr6 (42968509-42968105) | |
| 1031-1448, gnl|Hg17|chr4 (123092637-123095669) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| ste (0.540833) | |
| cte (0.29274) | |
| lin (0.291206) | |
| fcc (0.197785) | |
| mgm (0.180343) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| pla (0.133672) | |
| kid (0.129735) | |
| sug (0.127291) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| ldo (0.0970026) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ste (0.540833) | |
| cte (0.29274) | |
| lin (0.291206) | |
| fcc (0.197785) | |
| mgm (0.180343) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| pla (0.133672) | |
| kid (0.129735) | |
| sug (0.127291) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| ldo (0.0970026) |