Ss1.1-Mixc-0042,m15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCTATCTGACGGGGACCTATGTCCAGGAGGAGTCCCCTGAAGGGGGTCGGTTTAAGAAG GAGATTGTGGTGGATGGCCAGAGTTACCTGCTGCTGATCCGAGATGAAGGAGGCCCCCCT GAGCTCCAGTTTGCTGCCTGGGTGGACGCGGTGGTGTTTGTGTTCAGCCTGGAGGATGAA ATCAGCTTCCAGACAGTGTACAACTACTTCCTGCGGCTCTGCAGCTTCCGCAACGCCAGC GAGGTGCCCATGGTGCTGGTGGGCACACAGGACGCCATCAGTGCCGCCAACCCGCGGGTC ATTGACGACAGCCGGGCCCGCAAGCTGTCCACAGACCTGAAGCGCTGCACCTACTACGAG ACGTGCGCCACCTACGGGCTCAACGTGGAGCGCGTCTTCCAGGACGTGGCCCAGAAGGTA GTGGCCTTGCGGAAGAAGCAGCAGCTGGCCATCGGGCCCTGCAAGTCACTGCCCAACTCC CCCAGCCACTCGGCCGTGTCCGCCGCCTCCATCCCGGCCGTGCACATCAACCAGGCCACG AATGGCGGCAGCAGCGCCTTCAGCGACTACTCATCCTCAGTCCCCTCCACCCCCAGCATC AGCCAGCGGGAGCTGCGCATCGAGACCATCGCTGCCTCCTCCACCCCCACACCCATCCGC AAGCAGTCCAAGCGGCGCTCCAACATCTTCACGATATGTGCCACTGTTTCCAACTTTTCA TCAACAAAAAGGCCTTTCCAACTCCTTCCAAATTAGAAGACCAGGTGGTGACACACAGCA CCTCTGGACATTCTCCCCTGTGCGGGGCCGGAGGCGGGCCGGGCCCTGGGACTGCTCTCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCTATCTGACGGGGACCTATGTCCAGGAGGAGTCCCCTGAAGGGGGTCGGTTTAAGAAG GAGATTGTGGTGGATGGCCAGAGTTACCTGCTGCTGATCCGAGATGAAGGAGGCCCCCCT GAGCTCCAGTTTGCTGCCTGGGTGGACGCGGTGGTGTTTGTGTTCAGCCTGGAGGATGAA ATCAGCTTCCAGACAGTGTACAACTACTTCCTGCGGCTCTGCAGCTTCCGCAACGCCAGC GAGGTGCCCATGGTGCTGGTGGGCACACAGGACGCCATCAGTGCCGCCAACCCGCGGGTC ATTGACGACAGCCGGGCCCGCAAGCTGTCCACAGACCTGAAGCGCTGCACCTACTACGAG ACGTGCGCCACCTACGGGCTCAACGTGGAGCGCGTCTTCCAGGACGTGGCCCAGAAGGTA GTGGCCTTGCGGAAGAAGCAGCAGCTGGCCATCGGGCCCTGCAAGTCACTGCCCAACTCC CCCAGCCACTCGGCCGTGTCCGCCGCCTCCATCCCGGCCGTGCACATCAACCAGGCCACG AATGGCGGCAGCAGCGCCTTCAGCGACTACTCATCCTCAGTCCCCTCCACCCCCAGCATC AGCCAGCGGGAGCTGCGCATCGAGACCATCGCTGCCTCCTCCACCCCCACACCCATCCGC AAGCAGTCCAAGCGGCGCTCCAACATCTTCACGATATGTGCCACTGTTTCCAACTTTTCA TCAACAAAAAGGCCTTTCCAACTCCTTCCAAATTAGAAGACCAGGTGGTGACACACAGCA CCTCTGGACATTCTCCCCTGTGCGGGGCCGGAGGCGGGCCGGGCCCTGGGACTGCTCTCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 532-649, - strand, RNAz p=0.586657 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 532-649, - strand, RNAz p=0.586657 |
| Aligned organism(s): 51 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
| 271-406, gnl|bosTau2|chr3 (81873382-81873517) | |
| 271-406, gnl|canFam2|chr25 (49685426-49685593) | |
| 271-406, gnl|danRer3|chr6 (11365859-11365716) | |
| 271-406, gnl|dasNov1|scaffold_327 (182369-182248) | |
| 271-406, gnl|echTel1|scaffold_319337 (52881-52756) | |
| 271-406, gnl|fr1|chrUn (61516775-61516936) | |
| 271-406, gnl|galGal2|chr7 (5293340-5293178) | |
| 271-406, gnl|hg17|chr2 (236440977-236441152) | |
| 271-406, gnl|Hg17|chr2 (236440997-236441132) | |
| 271-406, gnl|loxAfr1|scaffold_140723 (501-678) | |
| 271-406, gnl|mm7|chr1 (89538928-89539082) | |
| 271-406, gnl|Mm7|chr1 (89538936-89539071) | |
| 271-406, gnl|monDom2|scaffold_120 (3258492-3258658) | |
| 271-406, gnl|panTro1|chr13 (127296396-127296571) | |
| 271-406, gnl|rheMac2|chr12 (99615220-99615396) | |
| 271-406, gnl|rn3|chr9 (88944644-88944806) | |
| 271-406, gnl|tetNig1|chr3 (1287373-1287216) | |
| 271-406, gnl|xenTro1|scaffold_49 (1807226-1807387) | |
| 532-702, gnl|bosTau2|chr4 (64476706-64476535) | |
| 532-702, gnl|canFam2|chr16 (18116679-18116853) | |
| 532-702, gnl|danRer3|chr6 (11338182-11338019) | |
| 532-702, gnl|dasNov1|scaffold_327 (182119-181969) | |
| 532-702, gnl|echTel1|scaffold_319337 (51650-51478) | |
| 532-702, gnl|fr1|chrUn (61518407-61518575) | |
| 532-702, gnl|hg17|chr7 (150254716-150254899) | |
| 532-702, gnl|Hg17|chr7 (150254719-150254893) | |
| 532-702, gnl|mm7|chr5 (23520118-23520299) | |
| 532-702, gnl|Mm7|chr5 (23520121-23520291) | |
| 532-702, gnl|monDom2|scaffold_7 (11294268-11294442) | |
| 532-702, gnl|oryCun1|scaffold_177806 (46858-47027) | |
| 532-702, gnl|rheMac2|chr3 (188065976-188066159) | |
| 532-702, gnl|rn3|chr4 (6061987-6061806) | |
| 532-702, gnl|tetNig1|chr3 (1284186-1284017) | |
| 532-702, gnl|xenTro1|scaffold_7941 (7455-7284) | |
| 538-692, gnl|bosTau2|chr3 (81924255-81924409) | |
| 538-692, gnl|canFam2|chr25 (49729442-49729631) | |
| 538-692, gnl|danRer3|chr6 (11338189-11338020) | |
| 538-692, gnl|dasNov1|scaffold_247726 (484-313) | |
| 538-692, gnl|fr1|chrUn (192880928-192880742) | |
| 538-692, gnl|galGal2|chr7 (5266425-5266239) | |
| 538-692, gnl|hg17|chr2 (236489996-236490185) | |
| 538-692, gnl|Hg17|chr2 (236490011-236490165) | |
| 538-692, gnl|mm7|chr1 (89569796-89569985) | |
| 538-692, gnl|Mm7|chr1 (89569811-89569965) | |
| 538-692, gnl|monDom2|scaffold_120 (3298678-3298867) | |
| 538-692, gnl|oryCun1|scaffold_177806 (46842-47030) | |
| 538-692, gnl|panTro1|chr13 (127346047-127346236) | |
| 538-692, gnl|rheMac2|chr12 (99663149-99663338) | |
| 538-692, gnl|rn3|chr9 (88975835-88976024) | |
| 538-692, gnl|tetNig1|chr3 (1284184-1284009) | |
| 538-692, gnl|xenTro1|scaffold_49 (1819341-1819515) |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 271-406, gnl|bosTau2|chr3 (81873382-81873517) | |
| 271-406, gnl|canFam2|chr25 (49685426-49685593) | |
| 271-406, gnl|danRer3|chr6 (11365859-11365716) | |
| 271-406, gnl|dasNov1|scaffold_327 (182369-182248) | |
| 271-406, gnl|echTel1|scaffold_319337 (52881-52756) | |
| 271-406, gnl|fr1|chrUn (61516775-61516936) | |
| 271-406, gnl|galGal2|chr7 (5293340-5293178) | |
| 271-406, gnl|hg17|chr2 (236440977-236441152) | |
| 271-406, gnl|Hg17|chr2 (236440997-236441132) | |
| 271-406, gnl|loxAfr1|scaffold_140723 (501-678) | |
| 271-406, gnl|mm7|chr1 (89538928-89539082) | |
| 271-406, gnl|Mm7|chr1 (89538936-89539071) | |
| 271-406, gnl|monDom2|scaffold_120 (3258492-3258658) | |
| 271-406, gnl|panTro1|chr13 (127296396-127296571) | |
| 271-406, gnl|rheMac2|chr12 (99615220-99615396) | |
| 271-406, gnl|rn3|chr9 (88944644-88944806) | |
| 271-406, gnl|tetNig1|chr3 (1287373-1287216) | |
| 271-406, gnl|xenTro1|scaffold_49 (1807226-1807387) | |
| 532-702, gnl|bosTau2|chr4 (64476706-64476535) | |
| 532-702, gnl|canFam2|chr16 (18116679-18116853) | |
| 532-702, gnl|danRer3|chr6 (11338182-11338019) | |
| 532-702, gnl|dasNov1|scaffold_327 (182119-181969) | |
| 532-702, gnl|echTel1|scaffold_319337 (51650-51478) | |
| 532-702, gnl|fr1|chrUn (61518407-61518575) | |
| 532-702, gnl|hg17|chr7 (150254716-150254899) | |
| 532-702, gnl|Hg17|chr7 (150254719-150254893) | |
| 532-702, gnl|mm7|chr5 (23520118-23520299) | |
| 532-702, gnl|Mm7|chr5 (23520121-23520291) | |
| 532-702, gnl|monDom2|scaffold_7 (11294268-11294442) | |
| 532-702, gnl|oryCun1|scaffold_177806 (46858-47027) | |
| 532-702, gnl|rheMac2|chr3 (188065976-188066159) | |
| 532-702, gnl|rn3|chr4 (6061987-6061806) | |
| 532-702, gnl|tetNig1|chr3 (1284186-1284017) | |
| 532-702, gnl|xenTro1|scaffold_7941 (7455-7284) | |
| 538-692, gnl|bosTau2|chr3 (81924255-81924409) | |
| 538-692, gnl|canFam2|chr25 (49729442-49729631) | |
| 538-692, gnl|danRer3|chr6 (11338189-11338020) | |
| 538-692, gnl|dasNov1|scaffold_247726 (484-313) | |
| 538-692, gnl|fr1|chrUn (192880928-192880742) | |
| 538-692, gnl|galGal2|chr7 (5266425-5266239) | |
| 538-692, gnl|hg17|chr2 (236489996-236490185) | |
| 538-692, gnl|Hg17|chr2 (236490011-236490165) | |
| 538-692, gnl|mm7|chr1 (89569796-89569985) | |
| 538-692, gnl|Mm7|chr1 (89569811-89569965) | |
| 538-692, gnl|monDom2|scaffold_120 (3298678-3298867) | |
| 538-692, gnl|oryCun1|scaffold_177806 (46842-47030) | |
| 538-692, gnl|panTro1|chr13 (127346047-127346236) | |
| 538-692, gnl|rheMac2|chr12 (99663149-99663338) | |
| 538-692, gnl|rn3|chr9 (88975835-88976024) | |
| 538-692, gnl|tetNig1|chr3 (1284184-1284009) | |
| 538-692, gnl|xenTro1|scaffold_49 (1819341-1819515) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) |