Non-Coding RNA Search

Ss1.1-Mixc-0042,m19.5

Sequence:


               
               ACAATATGGCGGCTTCCATGCTGGGTTTTCTGCTGCGGACCGTCCGGCAGATGGTTCCTT
CATCAGCTTCAGGCCAAGTTCGAAGTTACTACGTAGACTGGAAAATGTTGCGTGATGTGA
AGAGAAGAAAAATGGCTTATGAGTATGCAGATGAGAGGCTACGGATCAATTCTCTCAGGA
AAAATACCATTTTGCCTAAAGACCTTCAGGAAGTAGCTGATGAAGAAATCGCTTCCCTTC
CCCGGGATAGCTGTCCTGTTAGAATCAGAAATCGGTGTGTTATGACGTCCCGTCCACGAG
GTGTAAAGCGGCGCTGGAGGCTTAGTCGTATCGTCTTCCGTCACTTAGCCGACCACGGGC
AGCTGTCTGGGGTCCAGCGAGCAATGTGGTAATCAGCTCCAGAACCTATTGAACTTGCAA
GGAAACCAGTTCTGGCAAGAGACTTTTCTAATAGACAAAAAGCTTTTATGAGGGTGCAGA
ATAGGAGTCTAATCTACCAAATGCTGTCTGTAGTTAAATTACTTTTACATTTTAAATGAA
GAAATTTGAATGTTTCCTTCTGTCAGTGAATTCTGGCTGTGAATTATCTTTTCTCTTGGA
CTTAATAAACATCCTGTTACCAGGCATAGGGCAAGGGATAGAGTAATAAAAAAATATTTC
TATGAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAATATGGCGGCTTCCATGCTGGGTTTTCTGCTGCGGACCGTCCGGCAGATGGTTCCTT
CATCAGCTTCAGGCCAAGTTCGAAGTTACTACGTAGACTGGAAAATGTTGCGTGATGTGA
AGAGAAGAAAAATGGCTTATGAGTATGCAGATGAGAGGCTACGGATCAATTCTCTCAGGA
AAAATACCATTTTGCCTAAAGACCTTCAGGAAGTAGCTGATGAAGAAATCGCTTCCCTTC
CCCGGGATAGCTGTCCTGTTAGAATCAGAAATCGGTGTGTTATGACGTCCCGTCCACGAG
GTGTAAAGCGGCGCTGGAGGCTTAGTCGTATCGTCTTCCGTCACTTAGCCGACCACGGGC
AGCTGTCTGGGGTCCAGCGAGCAATGTGGTAATCAGCTCCAGAACCTATTGAACTTGCAA
GGAAACCAGTTCTGGCAAGAGACTTTTCTAATAGACAAAAAGCTTTTATGAGGGTGCAGA
ATAGGAGTCTAATCTACCAAATGCTGTCTGTAGTTAAATTACTTTTACATTTTAAATGAA
GAAATTTGAATGTTTCCTTCTGTCAGTGAATTCTGGCTGTGAATTATCTTTTCTCTTGGA
CTTAATAAACATCCTGTTACCAGGCATAGGGCAAGGGATAGAGTAATAAAAAAATATTTC
TATGAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57088973|ref|XP_537182.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57088973|ref|XP_537182.1|

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               182-464, gnl|bosTau2|chr16 (44666425-44666145)
               

               
               182-464, gnl|Hg17|chr1 (171715664-171715377)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               182-464, gnl|bosTau2|chr16 (44666425-44666145)
               

               
               182-464, gnl|Hg17|chr1 (171715664-171715377)

Expressed library(ies): 27 entry(ies)

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Expressed library(ies): 27 entry(ies)

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               cut (0.679694)
               

               
               ssp (0.406559)
               

               
               col (0.390016)
               

               
               elu (0.385356)
               

               
               cje (0.330469)
               

               
               sme (0.305437)
               

               
               cst (0.280073)
               

               
               bla (0.248694)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               ill (0.175593)
               

               
               cki (0.165235)
               

               
               cli (0.152812)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               che (0.136314)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 27 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.679694)
               

               
               ssp (0.406559)
               

               
               col (0.390016)
               

               
               elu (0.385356)
               

               
               cje (0.330469)
               

               
               sme (0.305437)
               

               
               cst (0.280073)
               

               
               bla (0.248694)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               ill (0.175593)
               

               
               cki (0.165235)
               

               
               cli (0.152812)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               che (0.136314)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	182-464, gnl\|bosTau2\|chr16 (44666425-44666145)
	182-464, gnl\|Hg17\|chr1 (171715664-171715377)

	cut (0.679694)
	ssp (0.406559)
	col (0.390016)
	elu (0.385356)
	cje (0.330469)
	sme (0.305437)
	cst (0.280073)
	bla (0.248694)
	nms (0.213858)
	hea (0.204499)
	fcc (0.197785)
	ldo (0.194005)
	nlu (0.191681)
	cmu (0.186393)
	ill (0.175593)
	cki (0.165235)
	cli (0.152812)
	lun (0.150489)
	bfe (0.149858)
	lin (0.145603)
	csk (0.140746)
	che (0.136314)
	nmm (0.132802)
	ese (0.126502)
	pgl (0.118483)
	spc (0.113366)
	eje (0.0988338)