Ss1.1-Mixc-0042,n22.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGCAAGTGGCGGCGGCATCGGTGGAGGCAGCTGAGACGGCGGCAGTGCGCGGGGGTCC GGGCAGCGACGGCGGCGAGCCGAGGAGGCGGGCGCGATGGAGCGGAAGAGCCCAAGCGGG AAGAAATTCCGGAGCAAGCCCCAGCTGGCACGGTACCTGGGTGGCTCCATGGACCTGAGC ACCTTTGATTTCCGGACGGGCAAGATGCTGATGAGCAAAATGAACAAGAGCCGGCAGAGG GTGCGGTACGACTCCCCCAGCCAGGTCAAGGGCAAGCCTGACTTGAACACAGCCCTCCCG GTCAGGCAGACGGCATCCATCTTCAAGCAGCCAGTGACCAAAATCACCAACCACCCCAGC AACAAGGTGAAGAGTGACCCCCAGAAGGCCGTGGAGCAGCCCCGGCAGCTGTTCTGGGAG AAGAAGCTGAGTGGTCTGAACGCCTTCGACATCGCAGAGGAGCTGGTGAAGACCATGGAC CTCCCCAAAGGCTTGCAAGGCGTGGGTCCTGGCTGCACAGACGAGACACTGCTCTCGGCC ATCGCCAGTGCCCTGCACACCAGCACCATGCCCATCACTGGGCAGCTCTCGGCCGCCGTG GAAAAGAACCCCGGGGTGTGGCTCAACACGGCCCAGCCACTTTGCAAGGCCTTCATGGTG ACGGACGAGGACATCAGGAAGCAGGAAGAGCTGGTGCAGCAAGTTCGCAAGCGGCTGGAG GAGGCGCTGATGGCCGACATGCTGGCCCATGTGGAGGAGCTGGCCCGGGACGGCGAGGCC CCTCTGGACAAGGTGGGTGCCGACGAGGAGGACGAGGATGAGGACGACGACGAGGAGGAG GAGCCTGACCAGGACCAGGAGATGGAGCACGTCTAGAGCAGAGGCCTGCCTGCCAGGCCA CCTTCGGACTCAGCCCTTGCCACACTGGGACCAGGCTTGGTGGCCCAGCCCAGCCAGGAG GAAGGTGGCTTCTCCTCACCCTGTCCAGGTGTGTCCCCTCCCCCAGGTCTCGGGGGCACG GCTGGAGGATGGCCCTTGCCCGTCATACTTGCCACATTTGCTCTTGTCTCATGAGCCTGG GGCCATCACTGCGAGTCGCTCCAGGGCTGTCTGCAGCAGGCCCTTCGGTGGGGTCATCGC TCACTCTGGACGTAGACCAGCTGGTCCCTGCGGCCACTGTCCTGGGCTCCTCACACAGGA CAACTGCCACCGGGCAGCCTGTAGAGCTCCCCATGGGGCTGGAGAAACATTTTGGAACAG TCTTGCCTCCGGACCTGTGCAAGCGAGAAGTCACGTTCAGGGTCCCCATCAGCTCTTCCA CAAGGGGTGCGGGAAGGCTCCCCTGTGCCCACTGGTGGGGCAGGGCACACCTGAAGCAGA TGGTTCCTTCAATAAATCCATGGGACAAATGAGGCCGGATGTCCCCGTAGCTGCTCCACC CTCTGTGTTGGCCTCATGTGGACAGGAACTCCGGCCTTGGCGCCCCCGGGGGCACAGCTG GAGGATGGCCTTGCTGTCTGTCCAACTGCCTGACAGTCGGTGCCATGGATGGAGAACTAC TCAAAGCTGGGCCCACCAGGCCAGGCTCTGAGGCAGCCTTCAGCAGGGACAGTGACACTC ACCTGGCAGGGTGGGGCCTCATGCCTCCTATCCCTCCCGCGTCCCTCCTGAGGCATGTTT CACACTTGGGCCCAGGCAGCAGCCTCGGCCAAGCATCGGGTTTAGAGGCCATCAGAGTCC TGCTACTTACCTCCTGCAGCCGGAGTGCCCTTGGCCAGGGCGGCTTCCACTGCTTTGAGT GGACCCCGGCCAGCTCCCCTCCCTCAGCTAGAGATGTGAACCATGGGCCAGTGGCACCCC ACAGCCAGCCAGCCTTGTCTCAGCCCTGCCCTGTCTGCAGCTGTGACTGACAGGGGGCCC AGGTCACTGCCCGTTTGGCCACTCTGAGCTGTGCTGTGGAGGGCTTGCTGGGCAGGGATG ATGGTGACAGTGGGAGGCCCTCAGGGCAGTGGCTCGCTGCCTGGTCCCAGCCAGGGCTCT GGCCCGGAGGTTGGGCTGACCACATCCTTCCAAGTCAAAGCACAAAACCCTAAGGACCGT GAACTCTGCCCCACAGAGGCTGCAGTACCAATGCCAGGGGCCAGGAAGACCCCTCTGCTG AGGCTGCGGCACTGAGGGAAAACTGGGTGGGGCCACATGAGGCTCCTCTGGTTGGCATCG AATAAAGCGTGTTGGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGCAAGTGGCGGCGGCATCGGTGGAGGCAGCTGAGACGGCGGCAGTGCGCGGGGGTCC GGGCAGCGACGGCGGCGAGCCGAGGAGGCGGGCGCGATGGAGCGGAAGAGCCCAAGCGGG AAGAAATTCCGGAGCAAGCCCCAGCTGGCACGGTACCTGGGTGGCTCCATGGACCTGAGC ACCTTTGATTTCCGGACGGGCAAGATGCTGATGAGCAAAATGAACAAGAGCCGGCAGAGG GTGCGGTACGACTCCCCCAGCCAGGTCAAGGGCAAGCCTGACTTGAACACAGCCCTCCCG GTCAGGCAGACGGCATCCATCTTCAAGCAGCCAGTGACCAAAATCACCAACCACCCCAGC AACAAGGTGAAGAGTGACCCCCAGAAGGCCGTGGAGCAGCCCCGGCAGCTGTTCTGGGAG AAGAAGCTGAGTGGTCTGAACGCCTTCGACATCGCAGAGGAGCTGGTGAAGACCATGGAC CTCCCCAAAGGCTTGCAAGGCGTGGGTCCTGGCTGCACAGACGAGACACTGCTCTCGGCC ATCGCCAGTGCCCTGCACACCAGCACCATGCCCATCACTGGGCAGCTCTCGGCCGCCGTG GAAAAGAACCCCGGGGTGTGGCTCAACACGGCCCAGCCACTTTGCAAGGCCTTCATGGTG ACGGACGAGGACATCAGGAAGCAGGAAGAGCTGGTGCAGCAAGTTCGCAAGCGGCTGGAG GAGGCGCTGATGGCCGACATGCTGGCCCATGTGGAGGAGCTGGCCCGGGACGGCGAGGCC CCTCTGGACAAGGTGGGTGCCGACGAGGAGGACGAGGATGAGGACGACGACGAGGAGGAG GAGCCTGACCAGGACCAGGAGATGGAGCACGTCTAGAGCAGAGGCCTGCCTGCCAGGCCA CCTTCGGACTCAGCCCTTGCCACACTGGGACCAGGCTTGGTGGCCCAGCCCAGCCAGGAG GAAGGTGGCTTCTCCTCACCCTGTCCAGGTGTGTCCCCTCCCCCAGGTCTCGGGGGCACG GCTGGAGGATGGCCCTTGCCCGTCATACTTGCCACATTTGCTCTTGTCTCATGAGCCTGG GGCCATCACTGCGAGTCGCTCCAGGGCTGTCTGCAGCAGGCCCTTCGGTGGGGTCATCGC TCACTCTGGACGTAGACCAGCTGGTCCCTGCGGCCACTGTCCTGGGCTCCTCACACAGGA CAACTGCCACCGGGCAGCCTGTAGAGCTCCCCATGGGGCTGGAGAAACATTTTGGAACAG TCTTGCCTCCGGACCTGTGCAAGCGAGAAGTCACGTTCAGGGTCCCCATCAGCTCTTCCA CAAGGGGTGCGGGAAGGCTCCCCTGTGCCCACTGGTGGGGCAGGGCACACCTGAAGCAGA TGGTTCCTTCAATAAATCCATGGGACAAATGAGGCCGGATGTCCCCGTAGCTGCTCCACC CTCTGTGTTGGCCTCATGTGGACAGGAACTCCGGCCTTGGCGCCCCCGGGGGCACAGCTG GAGGATGGCCTTGCTGTCTGTCCAACTGCCTGACAGTCGGTGCCATGGATGGAGAACTAC TCAAAGCTGGGCCCACCAGGCCAGGCTCTGAGGCAGCCTTCAGCAGGGACAGTGACACTC ACCTGGCAGGGTGGGGCCTCATGCCTCCTATCCCTCCCGCGTCCCTCCTGAGGCATGTTT CACACTTGGGCCCAGGCAGCAGCCTCGGCCAAGCATCGGGTTTAGAGGCCATCAGAGTCC TGCTACTTACCTCCTGCAGCCGGAGTGCCCTTGGCCAGGGCGGCTTCCACTGCTTTGAGT GGACCCCGGCCAGCTCCCCTCCCTCAGCTAGAGATGTGAACCATGGGCCAGTGGCACCCC ACAGCCAGCCAGCCTTGTCTCAGCCCTGCCCTGTCTGCAGCTGTGACTGACAGGGGGCCC AGGTCACTGCCCGTTTGGCCACTCTGAGCTGTGCTGTGGAGGGCTTGCTGGGCAGGGATG ATGGTGACAGTGGGAGGCCCTCAGGGCAGTGGCTCGCTGCCTGGTCCCAGCCAGGGCTCT GGCCCGGAGGTTGGGCTGACCACATCCTTCCAAGTCAAAGCACAAAACCCTAAGGACCGT GAACTCTGCCCCACAGAGGCTGCAGTACCAATGCCAGGGGCCAGGAAGACCCCTCTGCTG AGGCTGCGGCACTGAGGGAAAACTGGGTGGGGCCACATGAGGCTCCTCTGGTTGGCATCG AATAAAGCGTGTTGGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 2131-2239, + strand, RNAz p=0.564761 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 2131-2239, + strand, RNAz p=0.564761 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 109-271, gnl|bosTau2|chr7 (28924575-28924737) | |
| 109-271, gnl|canFam2|chr20 (60442388-60442201) | |
| 109-271, gnl|danRer3|chrUn (95876132-95876314) | |
| 109-271, gnl|dasNov1|scaffold_4227 (14528-14396) | |
| 109-271, gnl|echTel1|scaffold_112812 (737-931) | |
| 109-271, gnl|fr1|chrUn (176498213-176498031) | |
| 109-271, gnl|galGal2|chr28 (1335043-1334876) | |
| 109-271, gnl|hg17|chr19 (1536050-1536241) | |
| 109-271, gnl|Hg17|chr19 (1536215-1536053) | |
| 109-271, gnl|loxAfr1|scaffold_30208 (18395-18202) | |
| 109-271, gnl|mm7|chr10 (80184159-80184346) | |
| 109-271, gnl|Mm7|chr10 (80184324-80184162) | |
| 109-271, gnl|monDom2|scaffold_75 (2195001-2195184) | |
| 109-271, gnl|oryCun1|scaffold_206589 (110570-110745) | |
| 109-271, gnl|panTro1|chr20 (1610999-1611190) | |
| 109-271, gnl|rheMac2|chr19 (1358879-1359070) | |
| 109-271, gnl|rn3|chr7 (10828689-10828502) | |
| 109-271, gnl|tetNig1|chr1_random (4051637-4051815) | |
| 109-271, gnl|xenTro1|scaffold_898 (152636-152471) | |
| 675-899, gnl|bosTau2|chr7 (28927470-28927688) | |
| 675-899, gnl|Hg17|chr19 (1529540-1529321) | |
| 675-899, gnl|Mm7|chr10 (80181990-80181787) | |
| 1816-2239, gnl|bosTau2|chr7 (28928386-28928815) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 109-271, gnl|bosTau2|chr7 (28924575-28924737) | |
| 109-271, gnl|canFam2|chr20 (60442388-60442201) | |
| 109-271, gnl|danRer3|chrUn (95876132-95876314) | |
| 109-271, gnl|dasNov1|scaffold_4227 (14528-14396) | |
| 109-271, gnl|echTel1|scaffold_112812 (737-931) | |
| 109-271, gnl|fr1|chrUn (176498213-176498031) | |
| 109-271, gnl|galGal2|chr28 (1335043-1334876) | |
| 109-271, gnl|hg17|chr19 (1536050-1536241) | |
| 109-271, gnl|Hg17|chr19 (1536215-1536053) | |
| 109-271, gnl|loxAfr1|scaffold_30208 (18395-18202) | |
| 109-271, gnl|mm7|chr10 (80184159-80184346) | |
| 109-271, gnl|Mm7|chr10 (80184324-80184162) | |
| 109-271, gnl|monDom2|scaffold_75 (2195001-2195184) | |
| 109-271, gnl|oryCun1|scaffold_206589 (110570-110745) | |
| 109-271, gnl|panTro1|chr20 (1610999-1611190) | |
| 109-271, gnl|rheMac2|chr19 (1358879-1359070) | |
| 109-271, gnl|rn3|chr7 (10828689-10828502) | |
| 109-271, gnl|tetNig1|chr1_random (4051637-4051815) | |
| 109-271, gnl|xenTro1|scaffold_898 (152636-152471) | |
| 675-899, gnl|bosTau2|chr7 (28927470-28927688) | |
| 675-899, gnl|Hg17|chr19 (1529540-1529321) | |
| 675-899, gnl|Mm7|chr10 (80181990-80181787) | |
| 1816-2239, gnl|bosTau2|chr7 (28928386-28928815) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| ebs (0.473205) | |
| amn (0.417711) | |
| nlu (0.383362) | |
| hyp (0.285673) | |
| cga (0.279096) | |
| ecc (0.23007) | |
| fcc (0.197785) | |
| nep (0.183925) | |
| fty (0.17584) | |
| ill (0.175593) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| ute (0.132784) | |
| cov (0.132153) | |
| cly (0.120642) | |
| med (0.116252) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (0.473205) | |
| amn (0.417711) | |
| nlu (0.383362) | |
| hyp (0.285673) | |
| cga (0.279096) | |
| ecc (0.23007) | |
| fcc (0.197785) | |
| nep (0.183925) | |
| fty (0.17584) | |
| ill (0.175593) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| ute (0.132784) | |
| cov (0.132153) | |
| cly (0.120642) | |
| med (0.116252) |