Non-Coding RNA Search

Ss1.1-Mixc-0042,p18.5

Sequence:


               
               GCTCAATCCAAATAAAACTTAATTTATTGAAGACATCACACTGGCAACCCTTCTGAGTAC
CCAGGATATGGACAGGCTGCCTGTAAGAGCCCAGTCCCCCTTGCCACCAGCAAGGGATCC
ACAGCTGGCACACAGCTGCGGCTGCAGGGCAGTACAGGCCAGAGACAGAGCTGCGCGAAC
GGGCGCTGTACAGTCGAGGTGCCCACCCCCCCAACCAGCCCCAATAATATTACAGCGCCC
ACCCTCCCTAAGCCCAGACAGAAAAGCTTAAATATGGCCCAGTCCCCGGGCTATTCCTTC
ATTTCCGGACGGACACCCCCCGAGGGGGGATGGGAGAGGTCCCAGCTGCACCCTCCCCCT
GGGGTTCAGGCCCGGGGGAGGGCAACAGCAACAGCGGTGATCGCGGGGCCCAGACGTACC
CGTGTGGACCCCGTGGCCTCCCTGGGGCGGAAGGAGGGCTCCAGAAAAGGGAGGACAGCA
CCAGCGACCAAGGCCCTCGGTCACCACGGCAACTGACCTCCAGAGCCCGGCGGCGGCTCT
AAAAGGTGAGGAGCAGGACGTCCTGACGAGGGCATTCCAAGAGACTGGGCAGTAGGGGAC
GCAGGTCCCCAATAAATAGGCAGAGAGGCACTGCCCGCCCCTCACAACTCCAGAGCTCGG
CTGGGCCCTCAAGGGCTGCTTGGGCACTTAGTTGGCAGCTTCGCAGTGCCACCGCCATCA
CTTGCTGAGCTGCAGCGTGTCCAGGAGGAGGCGCTTGTGAGCCGGGTCCTGCACCCCAGC
TTCCTCCAGATCCTCCTCGGTGATGTCGCTGAGAAACTCCAGGTCGTCCCAGCCGTTGTG
CACCAGGCCCTCCTCGTAGCGCTCCAGGCCGATGGCCCGCAGCCAGGCGCCCATGCCCGC
CTCGCCCAGCCCACCGGTCCGCCCGGCCTGCGGGCACGGAGCCTCCTCCGCCAGGTCCTC
CTGGACGCTCTCTCGGATGCGCGGGGGAGGGAAGCTGAGAGGCCGGCCGTAGTCCGAGGG
CAGTGCCCGGGCCGGCTGCAGCTCCAGGGGCCCTGGCAGGAGCAGGCAGCGGCCGGGCCC
CGGGGGGGCGCTGTCCACCTCACTCAGTTTCTTGGCCACCTGCAGCACCGAGCAGGAGCG
GTCATCCCCGCCGGCCGCCTCCCCCAGGAACGTGCCCGGGGGCAAGGGGCCAGGGGGCAG
CGGGGGCCTTGGATGGGCCTTGGGAGGTGGCAGGGCACGGGCCTCACCCCCACTGCGGCC
CCGGACCCCTGGCCCTGGCAGAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCAATCCAAATAAAACTTAATTTATTGAAGACATCACACTGGCAACCCTTCTGAGTAC
CCAGGATATGGACAGGCTGCCTGTAAGAGCCCAGTCCCCCTTGCCACCAGCAAGGGATCC
ACAGCTGGCACACAGCTGCGGCTGCAGGGCAGTACAGGCCAGAGACAGAGCTGCGCGAAC
GGGCGCTGTACAGTCGAGGTGCCCACCCCCCCAACCAGCCCCAATAATATTACAGCGCCC
ACCCTCCCTAAGCCCAGACAGAAAAGCTTAAATATGGCCCAGTCCCCGGGCTATTCCTTC
ATTTCCGGACGGACACCCCCCGAGGGGGGATGGGAGAGGTCCCAGCTGCACCCTCCCCCT
GGGGTTCAGGCCCGGGGGAGGGCAACAGCAACAGCGGTGATCGCGGGGCCCAGACGTACC
CGTGTGGACCCCGTGGCCTCCCTGGGGCGGAAGGAGGGCTCCAGAAAAGGGAGGACAGCA
CCAGCGACCAAGGCCCTCGGTCACCACGGCAACTGACCTCCAGAGCCCGGCGGCGGCTCT
AAAAGGTGAGGAGCAGGACGTCCTGACGAGGGCATTCCAAGAGACTGGGCAGTAGGGGAC
GCAGGTCCCCAATAAATAGGCAGAGAGGCACTGCCCGCCCCTCACAACTCCAGAGCTCGG
CTGGGCCCTCAAGGGCTGCTTGGGCACTTAGTTGGCAGCTTCGCAGTGCCACCGCCATCA
CTTGCTGAGCTGCAGCGTGTCCAGGAGGAGGCGCTTGTGAGCCGGGTCCTGCACCCCAGC
TTCCTCCAGATCCTCCTCGGTGATGTCGCTGAGAAACTCCAGGTCGTCCCAGCCGTTGTG
CACCAGGCCCTCCTCGTAGCGCTCCAGGCCGATGGCCCGCAGCCAGGCGCCCATGCCCGC
CTCGCCCAGCCCACCGGTCCGCCCGGCCTGCGGGCACGGAGCCTCCTCCGCCAGGTCCTC
CTGGACGCTCTCTCGGATGCGCGGGGGAGGGAAGCTGAGAGGCCGGCCGTAGTCCGAGGG
CAGTGCCCGGGCCGGCTGCAGCTCCAGGGGCCCTGGCAGGAGCAGGCAGCGGCCGGGCCC
CGGGGGGGCGCTGTCCACCTCACTCAGTTTCTTGGCCACCTGCAGCACCGAGCAGGAGCG
GTCATCCCCGCCGGCCGCCTCCCCCAGGAACGTGCCCGGGGGCAAGGGGCCAGGGGGCAG
CGGGGGCCTTGGATGGGCCTTGGGAGGTGGCAGGGCACGGGCCTCACCCCCACTGCGGCC
CCGGACCCCTGGCCCTGGCAGAGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|495861|gb|AAA50503.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|495861|gb|AAA50503.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               295-405, - strand, RNAz p=0.618847
               

               
               513-646, - strand, RNAz p=0.999193
               

               
               942-1060, + strand, RNAz p=0.873469

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               295-405, - strand, RNAz p=0.618847
               

               
               513-646, - strand, RNAz p=0.999193
               

               
               942-1060, + strand, RNAz p=0.873469

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               3' of NM_001567, -
               

               
               3' of NM_001567, -

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_001567, -
               

               
               3' of NM_001567, -

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-811, gnl|bosTau2|chr15 (29839887-29840715)
               

               
               1-811, gnl|Hg17|chr11 (71627803-71626952)
               

               
               1-811, gnl|Mm7|chr7 (97868937-97869652)
               


               
               942-1284, gnl|bosTau2|chr15 (29841205-29841547)
               

               
               942-1284, gnl|Hg17|chr11 (71626489-71626147)
               

               
               942-1284, gnl|Mm7|chr7 (97870138-97870474)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-811, gnl|bosTau2|chr15 (29839887-29840715)
               

               
               1-811, gnl|Hg17|chr11 (71627803-71626952)
               

               
               1-811, gnl|Mm7|chr7 (97868937-97869652)
               


               
               942-1284, gnl|bosTau2|chr15 (29841205-29841547)
               

               
               942-1284, gnl|Hg17|chr11 (71626489-71626147)
               

               
               942-1284, gnl|Mm7|chr7 (97870138-97870474)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               lnt (0.284616)
               

               
               ese (0.253004)
               

               
               mas (0.210305)
               

               
               nep (0.183925)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               pty (0.142714)
               

               
               nmm (0.132802)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               med (0.116252)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 13 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.284616)
               

               
               ese (0.253004)
               

               
               mas (0.210305)
               

               
               nep (0.183925)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               pty (0.142714)
               

               
               nmm (0.132802)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               med (0.116252)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	295-405, - strand, RNAz p=0.618847
	513-646, - strand, RNAz p=0.999193
	942-1060, + strand, RNAz p=0.873469

	1-811, gnl\|bosTau2\|chr15 (29839887-29840715)
	1-811, gnl\|Hg17\|chr11 (71627803-71626952)
	1-811, gnl\|Mm7\|chr7 (97868937-97869652)

	942-1284, gnl\|bosTau2\|chr15 (29841205-29841547)
	942-1284, gnl\|Hg17\|chr11 (71626489-71626147)
	942-1284, gnl\|Mm7\|chr7 (97870138-97870474)

	lnt (0.284616)
	ese (0.253004)
	mas (0.210305)
	nep (0.183925)
	nje (0.16592)
	csp (0.161186)
	pty (0.142714)
	nmm (0.132802)
	eru (0.120048)
	clu (0.119646)
	med (0.116252)
	cty (0.10408)
	eje (0.0988338)