Non-Coding RNA Search

Ss1.1-Mixc-0043,c06.5

Sequence:


               
               CCTGCTTCGCCCTCGTGGGCACCGCCTTCAGCTGCGGGGTCCCCGCCATCCCGCCGGTGC
TGAGCGGCCTGTCCAGGATCGTCAATGGGGAGAACGCTGTCCCCGGCTCCTGGCCCTGGC
AGGTGTCCCTGCAGGACGGCACCGGCTTCCACTTCTGCGGGGGGTCCCTCATCAGCGAGG
ACTGGGTCGTCACCGCCGCCCACTGCGGGGTCACAACCTCCGACGTGGTGGTGGCTGGGG
AGTATGACCAGGCCTCAGACGCGGAGGACATCCAGGTCCTGAAGATTGCCAAGGTTTTCA
AGAACCCCAATTTCAGCCTGCTCACCGTGCGCAACGACATCACCCTGCTGAAGCTGGCCA
CGCCCGCGCGCTTCTCCCGGACCGTGTCCGCCGTGTGCCTGCCCAGCGCCTCCGACGACT
TCCCGGCCGGGACGCTGTGCGCCACCACCGGCTGGGGCAAGACCAAGTACACCGCCCTCA
AGACCCCCGACAAGCTGCAGCAGGCCGCCCTGCCCATCGTGTCCAGCACCGTCTGCAAGT
CCTACTGGGGCAGCAAGGTCACGGACGTGATGATCTGTGCTGGCGCCAGCGGCGTCTCCT
CCTGCATGGGCGACTCTGGTGGTCCCCTGGTCTGCCAGAAGAATGGAGCCTGGACCCTGG
TGGGCATTGTGTCCTGGGGCAGCAGCACCTGCTCCACCACCACACCAGCTGTGTACGCCC
GTGTCACCGCGCTCATCCCCTGGGTGCAGCAGATCCTGGCCAACAACTGAGCCTGTGGCT
CCTGCCAGCCCAAGCCCCAGCAGCCTTAATAAAAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGCTTCGCCCTCGTGGGCACCGCCTTCAGCTGCGGGGTCCCCGCCATCCCGCCGGTGC
TGAGCGGCCTGTCCAGGATCGTCAATGGGGAGAACGCTGTCCCCGGCTCCTGGCCCTGGC
AGGTGTCCCTGCAGGACGGCACCGGCTTCCACTTCTGCGGGGGGTCCCTCATCAGCGAGG
ACTGGGTCGTCACCGCCGCCCACTGCGGGGTCACAACCTCCGACGTGGTGGTGGCTGGGG
AGTATGACCAGGCCTCAGACGCGGAGGACATCCAGGTCCTGAAGATTGCCAAGGTTTTCA
AGAACCCCAATTTCAGCCTGCTCACCGTGCGCAACGACATCACCCTGCTGAAGCTGGCCA
CGCCCGCGCGCTTCTCCCGGACCGTGTCCGCCGTGTGCCTGCCCAGCGCCTCCGACGACT
TCCCGGCCGGGACGCTGTGCGCCACCACCGGCTGGGGCAAGACCAAGTACACCGCCCTCA
AGACCCCCGACAAGCTGCAGCAGGCCGCCCTGCCCATCGTGTCCAGCACCGTCTGCAAGT
CCTACTGGGGCAGCAAGGTCACGGACGTGATGATCTGTGCTGGCGCCAGCGGCGTCTCCT
CCTGCATGGGCGACTCTGGTGGTCCCCTGGTCTGCCAGAAGAATGGAGCCTGGACCCTGG
TGGGCATTGTGTCCTGGGGCAGCAGCACCTGCTCCACCACCACACCAGCTGTGTACGCCC
GTGTCACCGCGCTCATCCCCTGGGTGCAGCAGATCCTGGCCAACAACTGAGCCTGTGGCT
CCTGCCAGCCCAAGCCCCAGCAGCCTTAATAAAAGC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|49256410|gb|AAH73145.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|49256410|gb|AAH73145.1|

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

Help | Less info


               
               2-135, gnl|bosTau2|chr18 (1566507-1566640)
               

               
               2-135, gnl|Hg17|chr16 (73814143-73814271)
               

               
               2-135, gnl|Mm7|chr8 (110289654-110289541)
               


               
               292-474, gnl|bosTau2|chr18 (1567268-1567450)
               

               
               292-474, gnl|Hg17|chr16 (73814845-73815027)
               

               
               292-474, gnl|Mm7|chr8 (110288772-110288590)
               


               
               594-814, gnl|bosTau2|chr18 (1568861-1569079)
               

               
               594-814, gnl|Hg17|chr16 (73816086-73816310)
               

               
               594-814, gnl|Mm7|chr8 (110286809-110286577)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-135, gnl|bosTau2|chr18 (1566507-1566640)
               

               
               2-135, gnl|Hg17|chr16 (73814143-73814271)
               

               
               2-135, gnl|Mm7|chr8 (110289654-110289541)
               


               
               292-474, gnl|bosTau2|chr18 (1567268-1567450)
               

               
               292-474, gnl|Hg17|chr16 (73814845-73815027)
               

               
               292-474, gnl|Mm7|chr8 (110288772-110288590)
               


               
               594-814, gnl|bosTau2|chr18 (1568861-1569079)
               

               
               594-814, gnl|Hg17|chr16 (73816086-73816310)
               

               
               594-814, gnl|Mm7|chr8 (110286809-110286577)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               pan (0.23596)
               

               
               eje (0.0988338)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pan (0.23596)
               

               
               eje (0.0988338)

	2-135, gnl\|bosTau2\|chr18 (1566507-1566640)
	2-135, gnl\|Hg17\|chr16 (73814143-73814271)
	2-135, gnl\|Mm7\|chr8 (110289654-110289541)

	292-474, gnl\|bosTau2\|chr18 (1567268-1567450)
	292-474, gnl\|Hg17\|chr16 (73814845-73815027)
	292-474, gnl\|Mm7\|chr8 (110288772-110288590)

	594-814, gnl\|bosTau2\|chr18 (1568861-1569079)
	594-814, gnl\|Hg17\|chr16 (73816086-73816310)
	594-814, gnl\|Mm7\|chr8 (110286809-110286577)