Non-Coding RNA Search

Ss1.1-Mixc-0043,g12.5

Sequence:


               
               GAGAGGTAGCAGAAGTGGGGGGGCACGGCCGGGTAGATGTTGGGGAGCTGGATGTCAAAC
AGGTAGAGGCCGTCCTCGTACGGGGTGCGAGTGGGGCCTTTGATCAGGGCCGAGAAGAGG
TCCATCCTGTCCTCAAAGGTCTTGACCATGATGCCATCGGGCAGCGAGGTGGCCAGCAGC
GCCATCTCCTTCCGCACTGTGCTGAAGAACTTCTTGGCTTCTGGAGGCTGGAACTCAATC
TTCTTAAAAGAGTGATTTGAGGGCGCGAACTCCAGCACCGAGAAGACCTCGCCCTTGGCG
CTGGTGAAGGTGACCCCGGGCTTGCCGCCGCACTGCTGGCAGAGCACGGGCGTCTCGCTG
GGCCACTCGGCCTTCACGGGCGACTGCCCCTCGGGCTTCTCCTCCTTGCGCTCCGCGTCC
GGCGCCGCCTCCATCTTCTCCTCCTCCGCGATGGCCACGTTGTCCAGGGTCTTCTTGAGG
TTCTCCTGCAGCTTCTTGATGTCATCCAGAAACTTCTTCTCCCGCGTGGGCTTCTCGGGC
TCCACTGTGGGGGAGGTGGGCGAGCCCGTCAGGAGCTGCTCCACGGTCATGTTCTTGAGG
CTCTCCAGGATCTTGATGGCCTCCTTCAGCTCGCGGAAGCTCTTCGGGGGCCCGTCCTTG
CCAGCCTTCTCCATCAGCCAGGCCACAGGGGCGGCCATGGCCACGGCCCCCTGGATGGCG
GCCGTGGCGGCCTCCTCGCTGATCACCACACCCTTGTCCTCCTCGGGGGCTGCCGGCGGC
TCGGTGGCTGGGAGGGGGGGCTCCTCTATCTTGGGGTGCTCGTCCTCCACCAGCCCATTG
TCCGTCTCCCAGCTGTCACTGTCGTCCTCCCACTCATCCGAGGACGCCCCGCTGGTGCTG
CCTTCGACCGAGTCATAGTCTGACTCCTTGATCTCGCCCACGCGTCCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAGGTAGCAGAAGTGGGGGGGCACGGCCGGGTAGATGTTGGGGAGCTGGATGTCAAAC
AGGTAGAGGCCGTCCTCGTACGGGGTGCGAGTGGGGCCTTTGATCAGGGCCGAGAAGAGG
TCCATCCTGTCCTCAAAGGTCTTGACCATGATGCCATCGGGCAGCGAGGTGGCCAGCAGC
GCCATCTCCTTCCGCACTGTGCTGAAGAACTTCTTGGCTTCTGGAGGCTGGAACTCAATC
TTCTTAAAAGAGTGATTTGAGGGCGCGAACTCCAGCACCGAGAAGACCTCGCCCTTGGCG
CTGGTGAAGGTGACCCCGGGCTTGCCGCCGCACTGCTGGCAGAGCACGGGCGTCTCGCTG
GGCCACTCGGCCTTCACGGGCGACTGCCCCTCGGGCTTCTCCTCCTTGCGCTCCGCGTCC
GGCGCCGCCTCCATCTTCTCCTCCTCCGCGATGGCCACGTTGTCCAGGGTCTTCTTGAGG
TTCTCCTGCAGCTTCTTGATGTCATCCAGAAACTTCTTCTCCCGCGTGGGCTTCTCGGGC
TCCACTGTGGGGGAGGTGGGCGAGCCCGTCAGGAGCTGCTCCACGGTCATGTTCTTGAGG
CTCTCCAGGATCTTGATGGCCTCCTTCAGCTCGCGGAAGCTCTTCGGGGGCCCGTCCTTG
CCAGCCTTCTCCATCAGCCAGGCCACAGGGGCGGCCATGGCCACGGCCCCCTGGATGGCG
GCCGTGGCGGCCTCCTCGCTGATCACCACACCCTTGTCCTCCTCGGGGGCTGCCGGCGGC
TCGGTGGCTGGGAGGGGGGGCTCCTCTATCTTGGGGTGCTCGTCCTCCACCAGCCCATTG
TCCGTCTCCCAGCTGTCACTGTCGTCCTCCCACTCATCCGAGGACGCCCCGCTGGTGCTG
CCTTCGACCGAGTCATAGTCTGACTCCTTGATCTCGCCCACGCGTCCG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               619-778, - strand, RNAz p=0.927918

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               619-778, - strand, RNAz p=0.927918

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AB051521, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AB051521, -

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               122-257, gnl|bosTau2|chr19 (49273661-49273526)
               

               
               122-257, gnl|canFam2|chr9 (7304494-7304375)
               

               
               122-257, gnl|danRer3|chr20 (13192874-13192983)
               

               
               122-257, gnl|dasNov1|scaffold_139596 (313-432)
               

               
               122-257, gnl|echTel1|scaffold_200444 (1339-1230)
               

               
               122-257, gnl|fr1|chrUn (305439954-305439845)
               

               
               122-257, gnl|galGal2|chr18 (4250538-4250434)
               

               
               122-257, gnl|hg17|chr17 (71903391-71903500)
               

               
               122-257, gnl|Hg17|chr17 (71903400-71903535)
               

               
               122-257, gnl|loxAfr1|scaffold_88594 (21511-21402)
               

               
               122-257, gnl|mm7|chr11 (116650122-116650231)
               

               
               122-257, gnl|Mm7|chr11 (116650131-116650266)
               

               
               122-257, gnl|monDom2|scaffold_18 (34676930-34677036)
               

               
               122-257, gnl|panTro1|chr19 (75268121-75268230)
               

               
               122-257, gnl|rheMac2|chr16 (71751991-71752100)
               

               
               122-257, gnl|rn3|chr10 (106664938-106665047)
               

               
               122-257, gnl|tetNig1|chrUn_random (27268125-27268016)
               

               
               122-257, gnl|xenTro1|scaffold_135 (1879946-1879841)
               


               
               260-935, gnl|bosTau2|chr19 (49273325-49272650)
               

               
               260-935, gnl|Hg17|chr17 (71903804-71904476)
               

               
               260-935, gnl|Mm7|chr11 (116650384-116651062)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               122-257, gnl|bosTau2|chr19 (49273661-49273526)
               

               
               122-257, gnl|canFam2|chr9 (7304494-7304375)
               

               
               122-257, gnl|danRer3|chr20 (13192874-13192983)
               

               
               122-257, gnl|dasNov1|scaffold_139596 (313-432)
               

               
               122-257, gnl|echTel1|scaffold_200444 (1339-1230)
               

               
               122-257, gnl|fr1|chrUn (305439954-305439845)
               

               
               122-257, gnl|galGal2|chr18 (4250538-4250434)
               

               
               122-257, gnl|hg17|chr17 (71903391-71903500)
               

               
               122-257, gnl|Hg17|chr17 (71903400-71903535)
               

               
               122-257, gnl|loxAfr1|scaffold_88594 (21511-21402)
               

               
               122-257, gnl|mm7|chr11 (116650122-116650231)
               

               
               122-257, gnl|Mm7|chr11 (116650131-116650266)
               

               
               122-257, gnl|monDom2|scaffold_18 (34676930-34677036)
               

               
               122-257, gnl|panTro1|chr19 (75268121-75268230)
               

               
               122-257, gnl|rheMac2|chr16 (71751991-71752100)
               

               
               122-257, gnl|rn3|chr10 (106664938-106665047)
               

               
               122-257, gnl|tetNig1|chrUn_random (27268125-27268016)
               

               
               122-257, gnl|xenTro1|scaffold_135 (1879946-1879841)
               


               
               260-935, gnl|bosTau2|chr19 (49273325-49272650)
               

               
               260-935, gnl|Hg17|chr17 (71903804-71904476)
               

               
               260-935, gnl|Mm7|chr11 (116650384-116651062)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	122-257, gnl\|bosTau2\|chr19 (49273661-49273526)
	122-257, gnl\|canFam2\|chr9 (7304494-7304375)
	122-257, gnl\|danRer3\|chr20 (13192874-13192983)
	122-257, gnl\|dasNov1\|scaffold_139596 (313-432)
	122-257, gnl\|echTel1\|scaffold_200444 (1339-1230)
	122-257, gnl\|fr1\|chrUn (305439954-305439845)
	122-257, gnl\|galGal2\|chr18 (4250538-4250434)
	122-257, gnl\|hg17\|chr17 (71903391-71903500)
	122-257, gnl\|Hg17\|chr17 (71903400-71903535)
	122-257, gnl\|loxAfr1\|scaffold_88594 (21511-21402)
	122-257, gnl\|mm7\|chr11 (116650122-116650231)
	122-257, gnl\|Mm7\|chr11 (116650131-116650266)
	122-257, gnl\|monDom2\|scaffold_18 (34676930-34677036)
	122-257, gnl\|panTro1\|chr19 (75268121-75268230)
	122-257, gnl\|rheMac2\|chr16 (71751991-71752100)
	122-257, gnl\|rn3\|chr10 (106664938-106665047)
	122-257, gnl\|tetNig1\|chrUn_random (27268125-27268016)
	122-257, gnl\|xenTro1\|scaffold_135 (1879946-1879841)

	260-935, gnl\|bosTau2\|chr19 (49273325-49272650)
	260-935, gnl\|Hg17\|chr17 (71903804-71904476)
	260-935, gnl\|Mm7\|chr11 (116650384-116651062)