Ss1.1-Mixc-0043,g22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTTTTTTAATTCTTTTATTCTTCTTTTTTAACAAAGGGCCCCAGGGACAGGGGACCA GGGGAGTGGGGAGGAAGGGGAGCAAGGCCCCAGCCCCACAACCCTTCCCCTCCCGCCCCT TTCCCCCTTATATATTTATAATCTATATACAAGCCCCGGGGGGTGGGGGGCAAAGGGAAC TCCCTCAGCGGGGTGGGGGCAACCCAGGCTCCTTGTCCCCTCGGGACCCGGGCTCCTCTG CCCTTCGGGATGGCCCTTCTCGAGATGGTGGCCCTGTCCGCTCCCAAGGCTTCGGCATCC AGCGCAGGGCATCTGGTGGGGAGGCCTGCTGGTAGAGGTCGATGCGCTGGGTGCGGAAAA CTCCACTGTAGGTGGAAGGTGGGGCCTTGAGACGGGAATTGAGGCCAGAGAAAGACCTTC CAGCTGGGGGAGTACGTGACGACCCAGGTCCCCCAAGGTTGCTGTTCAGTTTTCGGTAAT CCTGGAACGGCTTTAGTTCTACAGGGTGCAGCTCTGCTCGCCCCAAGCTAGGGCCAAAGG GCCTGGCCGGTGAAGGCAGCACCCGAGCAGCAGGAGCAGGCGGAGGCCGCACAGCCAGGC TGGGGGGCTGCAGAGCAGGACCCACAGGTAACAGAGAAAGGGGCGGTGGAGCAGGAGGTG GTGCTGGTGGCAGGGAGCCAAAGTTTACCACAGGCAGCTGTGAGTCCACCATGGGTAGAA GCATCTGCTGGGCAGGAGCCCCCGAGGGGAGGAAACCACTCTGGCCACCAGGTTGCAGAG GAGTAGAATAAAAATCTGAGGGGGATGGCAGATCCTGGCGCACCTGCAGCAAGGGTGGAT CTGGCAAAGGGCTAGGGCAGAAAGCTGGAGAGTAGAGGAAGGAAGGTGGAGGGAAGAGAA CTCCTCCGGCTGGCAACTTCCCCAGTTCTGCTGCTTGCAGTGCTGAGAAATCCAGAAACT GGCCCTTGACGGCTACCCCAGAGAGCAGTGCTGAGGGTGGGGCTGGGCCCGGGGGCAGAT ATAGGGGCTGTGATCTGTAAGGGTGCAGTGAGGGTGTCCCAGGGCGGAAGCCTCCATTGT TGGGATGCAACTGAGAGTCTATGGTTCCCCCCGAGACCTGAGAACTGGGAGGCCCAGGGC TGCCATAGAAGACCTCAGGGTACAAGCGTTGGCCTGAGGAGCTGGGCTCTGGGCCACAGT GTGCAGAACCCAGGCTCTTGGACTGAGGCTCAGCTGAAGCAGAAGCACTGGGGAGCAGCT CCCAGTCTCGAGCGATGGGAATGGCCTCCGTGACTGATGCCGTTAGCTCCTTCTCTGCTT TTAAACTGTCTCCTACCACTAGGCACAAATCCGAGTCCTTGTCACTGGTGCCAAACTGGA CTGGGGGACCAGGTCGATGGGCCGACCGGAGGGAGCTAGGCTCTGGGCCTCGGTCTGTAC GCTGCAATCGCTCTGTGCCAATGGGCCCAGGGGGCAGAGGCTGCTCCCGTGGCAGCTCCT TTCTATCCCCATCATGGGGGGCAGGTGGCCGTCTCCTAGGAGGTTCAGAGGGTTCAGAGC CAGGTGGACCCTCACCAGGAACAGCATTCAGGGGTGAGGGGCCTCCAGGCCGCTTGGGGA GCCCGTCTGCTGCCCCCTTGAGTCCTCCATCAGGGGAACTTCGCTGGCTGCAGGGACCTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTTTTTTAATTCTTTTATTCTTCTTTTTTAACAAAGGGCCCCAGGGACAGGGGACCA GGGGAGTGGGGAGGAAGGGGAGCAAGGCCCCAGCCCCACAACCCTTCCCCTCCCGCCCCT TTCCCCCTTATATATTTATAATCTATATACAAGCCCCGGGGGGTGGGGGGCAAAGGGAAC TCCCTCAGCGGGGTGGGGGCAACCCAGGCTCCTTGTCCCCTCGGGACCCGGGCTCCTCTG CCCTTCGGGATGGCCCTTCTCGAGATGGTGGCCCTGTCCGCTCCCAAGGCTTCGGCATCC AGCGCAGGGCATCTGGTGGGGAGGCCTGCTGGTAGAGGTCGATGCGCTGGGTGCGGAAAA CTCCACTGTAGGTGGAAGGTGGGGCCTTGAGACGGGAATTGAGGCCAGAGAAAGACCTTC CAGCTGGGGGAGTACGTGACGACCCAGGTCCCCCAAGGTTGCTGTTCAGTTTTCGGTAAT CCTGGAACGGCTTTAGTTCTACAGGGTGCAGCTCTGCTCGCCCCAAGCTAGGGCCAAAGG GCCTGGCCGGTGAAGGCAGCACCCGAGCAGCAGGAGCAGGCGGAGGCCGCACAGCCAGGC TGGGGGGCTGCAGAGCAGGACCCACAGGTAACAGAGAAAGGGGCGGTGGAGCAGGAGGTG GTGCTGGTGGCAGGGAGCCAAAGTTTACCACAGGCAGCTGTGAGTCCACCATGGGTAGAA GCATCTGCTGGGCAGGAGCCCCCGAGGGGAGGAAACCACTCTGGCCACCAGGTTGCAGAG GAGTAGAATAAAAATCTGAGGGGGATGGCAGATCCTGGCGCACCTGCAGCAAGGGTGGAT CTGGCAAAGGGCTAGGGCAGAAAGCTGGAGAGTAGAGGAAGGAAGGTGGAGGGAAGAGAA CTCCTCCGGCTGGCAACTTCCCCAGTTCTGCTGCTTGCAGTGCTGAGAAATCCAGAAACT GGCCCTTGACGGCTACCCCAGAGAGCAGTGCTGAGGGTGGGGCTGGGCCCGGGGGCAGAT ATAGGGGCTGTGATCTGTAAGGGTGCAGTGAGGGTGTCCCAGGGCGGAAGCCTCCATTGT TGGGATGCAACTGAGAGTCTATGGTTCCCCCCGAGACCTGAGAACTGGGAGGCCCAGGGC TGCCATAGAAGACCTCAGGGTACAAGCGTTGGCCTGAGGAGCTGGGCTCTGGGCCACAGT GTGCAGAACCCAGGCTCTTGGACTGAGGCTCAGCTGAAGCAGAAGCACTGGGGAGCAGCT CCCAGTCTCGAGCGATGGGAATGGCCTCCGTGACTGATGCCGTTAGCTCCTTCTCTGCTT TTAAACTGTCTCCTACCACTAGGCACAAATCCGAGTCCTTGTCACTGGTGCCAAACTGGA CTGGGGGACCAGGTCGATGGGCCGACCGGAGGGAGCTAGGCTCTGGGCCTCGGTCTGTAC GCTGCAATCGCTCTGTGCCAATGGGCCCAGGGGGCAGAGGCTGCTCCCGTGGCAGCTCCT TTCTATCCCCATCATGGGGGGCAGGTGGCCGTCTCCTAGGAGGTTCAGAGGGTTCAGAGC CAGGTGGACCCTCACCAGGAACAGCATTCAGGGGTGAGGGGCCTCCAGGCCGCTTGGGGA GCCCGTCTGCTGCCCCCTTGAGTCCTCCATCAGGGGAACTTCGCTGGCTGCAGGGACCTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 7 entry(ies) | More info |
| Predicted RNA structure(s): 7 entry(ies) | Help | Less info |
| Predicted RNA structure(s): 7 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 1-106, gnl|bosTau2|chr11 (1604087-1603985) | |
| 1-106, gnl|Hg17|chr6 (31713525-31713420) | |
| 512-727, gnl|bosTau2|chr23 (23301705-23301490) | |
| 512-727, gnl|Hg17|chr6 (31712701-31712486) | |
| 512-727, gnl|Mm7|chr17 (33247058-33247273) | |
| 821-1042, gnl|bosTau2|chr23 (23301178-23300957) | |
| 821-1042, gnl|Hg17|chr6 (31712178-31711957) | |
| 821-1042, gnl|Mm7|chr17 (33247644-33247865) | |
| 1116-1287, gnl|bosTau2|chr23 (23300554-23300383) | |
| 1116-1287, gnl|canFam2|chr12 (4126565-4126738) | |
| 1116-1287, gnl|echTel1|scaffold_301888 (50265-50089) | |
| 1116-1287, gnl|hg17|chr6 (31711336-31711509) | |
| 1116-1287, gnl|Hg17|chr6 (31711507-31711336) | |
| 1116-1287, gnl|loxAfr1|scaffold_26979 (5926-6099) | |
| 1116-1287, gnl|mm7|chr17 (33249938-33249765) | |
| 1116-1287, gnl|Mm7|chr17 (33249765-33249936) | |
| 1116-1287, gnl|monDom2|scaffold_42 (17829864-17829691) | |
| 1116-1287, gnl|oryCun1|scaffold_198577 (4922-5093) | |
| 1116-1287, gnl|panTro1|chr5 (32110532-32110705) | |
| 1116-1287, gnl|rheMac2|chr4 (31277105-31277278) | |
| 1116-1287, gnl|rn3|chr20 (3734735-3734908) | |
| 1498-1680, gnl|bosTau2|chr23 (23299800-23299618) | |
| 1498-1680, gnl|Hg17|chr6 (31710734-31710561) | |
| 1498-1680, gnl|Mm7|chr17 (33250655-33250837) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-106, gnl|bosTau2|chr11 (1604087-1603985) | |
| 1-106, gnl|Hg17|chr6 (31713525-31713420) | |
| 512-727, gnl|bosTau2|chr23 (23301705-23301490) | |
| 512-727, gnl|Hg17|chr6 (31712701-31712486) | |
| 512-727, gnl|Mm7|chr17 (33247058-33247273) | |
| 821-1042, gnl|bosTau2|chr23 (23301178-23300957) | |
| 821-1042, gnl|Hg17|chr6 (31712178-31711957) | |
| 821-1042, gnl|Mm7|chr17 (33247644-33247865) | |
| 1116-1287, gnl|bosTau2|chr23 (23300554-23300383) | |
| 1116-1287, gnl|canFam2|chr12 (4126565-4126738) | |
| 1116-1287, gnl|echTel1|scaffold_301888 (50265-50089) | |
| 1116-1287, gnl|hg17|chr6 (31711336-31711509) | |
| 1116-1287, gnl|Hg17|chr6 (31711507-31711336) | |
| 1116-1287, gnl|loxAfr1|scaffold_26979 (5926-6099) | |
| 1116-1287, gnl|mm7|chr17 (33249938-33249765) | |
| 1116-1287, gnl|Mm7|chr17 (33249765-33249936) | |
| 1116-1287, gnl|monDom2|scaffold_42 (17829864-17829691) | |
| 1116-1287, gnl|oryCun1|scaffold_198577 (4922-5093) | |
| 1116-1287, gnl|panTro1|chr5 (32110532-32110705) | |
| 1116-1287, gnl|rheMac2|chr4 (31277105-31277278) | |
| 1116-1287, gnl|rn3|chr20 (3734735-3734908) | |
| 1498-1680, gnl|bosTau2|chr23 (23299800-23299618) | |
| 1498-1680, gnl|Hg17|chr6 (31710734-31710561) | |
| 1498-1680, gnl|Mm7|chr17 (33250655-33250837) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| nlu (0.383362) | |
| mcp (0.341297) | |
| ecc (0.23007) | |
| ece (0.229305) | |
| nep (0.183925) | |
| ill (0.175593) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| eli (0.151814) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| ute (0.132784) | |
| ese (0.126502) | |
| eep (0.122564) | |
| med (0.116252) | |
| jca (0.11396) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.383362) | |
| mcp (0.341297) | |
| ecc (0.23007) | |
| ece (0.229305) | |
| nep (0.183925) | |
| ill (0.175593) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| eli (0.151814) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| ute (0.132784) | |
| ese (0.126502) | |
| eep (0.122564) | |
| med (0.116252) | |
| jca (0.11396) |