Non-Coding RNA Search

Ss1.1-Mixc-0043,i06.5

Sequence:


               
               GGATGGTAACTGAGCTTCCCCAGTCAGTGACCAAAGGCGACCCATTCAGAGCTAAAGCAA
GGCAGAGATTCTGCCCTTACTTTCCAAATCCCTTGAAAGGCTGGTCTGCCCCCCCGCCCC
CCAACATGTGCAGGCCTGATCCCGGCTCACCTTACTCGTGATTCTCTTCTCGTGATAACA
CTCGTGTCACTTTCACGCAGCATGGCGAGCCAGCCCTGGGTGTACCATTCTGTCACTCGC
CTGTAAGAAATGCGCCTCTGCCTTCCGATTGTCTGTGCCTTTCCAACGAAAATGTGCTTG
AGGTGTGTGTGTCGGATCCACTTTGAAAACTAATTTCGCTTTAGTTCTGGGAACTACTGG
ATGACTTTTTTTAATTCCCCTCAAAGGAGCTGAGACGAGAAGGGGAAGAATAAGAAGGAC
AGGAACAGGGGTGATGAGACTTCAGCCCAGAAAGGAAGAAAACTCCCTTTGCATTTTCCA
AGAGGTGATTGCATCCGCTATAAAAGGACAGACAGACAATCTGGCTGTTTTATGTGTATT
TTGCCTGCACACCAGTGCCCTCTGGGAACACTGGGGGTGCTTATTCCAGAGACCACCTCA
CTCACCTCTCCTCCCCCCTTCTCCTTTATAGACCAACAACCCAAGCTCAGGTCATTGGCT
AACTTGCCTGGAGTTGAGAGACTCTGTGGCTCCTTGTCCGTCCTGTGCATATACTACTGG
GAAAAGCAAGGATTCTCAGCAGGGTTGCTCCTGCCGTCTGGCTGCATATATTCACAATTG
TCTTCCCCTAGACTGACTGTATATGTTTGAGAATGACAGGTAAAAGATTTGCAACTTNCA
------------------------GTTTATTTAAAATGCAGATTCCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATGGTAACTGAGCTTCCCCAGTCAGTGACCAAAGGCGACCCATTCAGAGCTAAAGCAA
GGCAGAGATTCTGCCCTTACTTTCCAAATCCCTTGAAAGGCTGGTCTGCCCCCCCGCCCC
CCAACATGTGCAGGCCTGATCCCGGCTCACCTTACTCGTGATTCTCTTCTCGTGATAACA
CTCGTGTCACTTTCACGCAGCATGGCGAGCCAGCCCTGGGTGTACCATTCTGTCACTCGC
CTGTAAGAAATGCGCCTCTGCCTTCCGATTGTCTGTGCCTTTCCAACGAAAATGTGCTTG
AGGTGTGTGTGTCGGATCCACTTTGAAAACTAATTTCGCTTTAGTTCTGGGAACTACTGG
ATGACTTTTTTTAATTCCCCTCAAAGGAGCTGAGACGAGAAGGGGAAGAATAAGAAGGAC
AGGAACAGGGGTGATGAGACTTCAGCCCAGAAAGGAAGAAAACTCCCTTTGCATTTTCCA
AGAGGTGATTGCATCCGCTATAAAAGGACAGACAGACAATCTGGCTGTTTTATGTGTATT
TTGCCTGCACACCAGTGCCCTCTGGGAACACTGGGGGTGCTTATTCCAGAGACCACCTCA
CTCACCTCTCCTCCCCCCTTCTCCTTTATAGACCAACAACCCAAGCTCAGGTCATTGGCT
AACTTGCCTGGAGTTGAGAGACTCTGTGGCTCCTTGTCCGTCCTGTGCATATACTACTGG
GAAAAGCAAGGATTCTCAGCAGGGTTGCTCCTGCCGTCTGGCTGCATATATTCACAATTG
TCTTCCCCTAGACTGACTGTATATGTTTGAGAATGACAGGTAAAAGATTTGCAACTTNCA
------------------------GTTTATTTAAAATGCAGATTCCTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-111, - strand, RNAz p=0.79491

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-111, - strand, RNAz p=0.79491

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-824, gnl|bosTau2|chr2 (81698994-81699815)
               

               
               1-824, gnl|Hg17|chr1 (24541267-24542103)
               

               
               1-824, gnl|Mm7|chr4 (134830557-134829852)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-824, gnl|bosTau2|chr2 (81698994-81699815)
               

               
               1-824, gnl|Hg17|chr1 (24541267-24542103)
               

               
               1-824, gnl|Mm7|chr4 (134830557-134829852)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ill (0.175593)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               ecc (0.115035)

	1-824, gnl\|bosTau2\|chr2 (81698994-81699815)
	1-824, gnl\|Hg17\|chr1 (24541267-24542103)
	1-824, gnl\|Mm7\|chr4 (134830557-134829852)