Non-Coding RNA Search

Ss1.1-Mixc-0043,i18.5

Sequence:


               
               GGAGTCCCTGCTCAGCACCCCCCTTGCCCCAAGCCAGAGAGCCCCAGGTCGTGCCAGCCC
CTCCCCACCGCCCGGGCACGATGGGCAAGGAGAAGACCCACATCAACATTGTGGTCATCG
GCCACGTGGACTCGGGCAAGTCCACCACCACCGGCCACCTCATCTACAAATGTGGGGGCA
TCGACAAGAGGACCATCGAGAAGTTTGAGAAGGAGGCGGCCGAGATGGGGAAGGGCTCCT
TCAAGTACGCCTGGGTGCTGGACAAGCTGAAGGCGGAGCGCGAGCGCGGCATCACCATCG
ACATCTCCCTCTGGAAGTTCGAGACCACCAAGTACTACATCACCATCATCGACGCGCCGG
GCCACCGCGACTTCATCAAGAACATGATCACCGGCACCTCCCAGGCGGACTGCGCAGTGC
TGATCGTGGCGGCGGGAGTGGGCGAGTTCGAGGCGGGCATCTCTAAGAACGGGCAGACCC
GCGAGCACGCGCTGCTGGCCTACACGCTGGGCGTGAAGCAGCTGATCGTCGGCGTCAACA
AGATGGACTCCACGGAGCCGGCCTACAGCGAGAAGCGCTACGACGAGATCGTCAAGGAGG
TCAGCGCCTACATCAAGAAGATCGGCTACAACCCGGCCACCGTGCCCTTCGTGCCCATCT
CGGGCTGGCACGGCGACAACATGCTGGAGCCCTCCCCCAACATGCCCTGGTTCAAGGGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGTCCCTGCTCAGCACCCCCCTTGCCCCAAGCCAGAGAGCCCCAGGTCGTGCCAGCCC
CTCCCCACCGCCCGGGCACGATGGGCAAGGAGAAGACCCACATCAACATTGTGGTCATCG
GCCACGTGGACTCGGGCAAGTCCACCACCACCGGCCACCTCATCTACAAATGTGGGGGCA
TCGACAAGAGGACCATCGAGAAGTTTGAGAAGGAGGCGGCCGAGATGGGGAAGGGCTCCT
TCAAGTACGCCTGGGTGCTGGACAAGCTGAAGGCGGAGCGCGAGCGCGGCATCACCATCG
ACATCTCCCTCTGGAAGTTCGAGACCACCAAGTACTACATCACCATCATCGACGCGCCGG
GCCACCGCGACTTCATCAAGAACATGATCACCGGCACCTCCCAGGCGGACTGCGCAGTGC
TGATCGTGGCGGCGGGAGTGGGCGAGTTCGAGGCGGGCATCTCTAAGAACGGGCAGACCC
GCGAGCACGCGCTGCTGGCCTACACGCTGGGCGTGAAGCAGCTGATCGTCGGCGTCAACA
AGATGGACTCCACGGAGCCGGCCTACAGCGAGAAGCGCTACGACGAGATCGTCAAGGAGG
TCAGCGCCTACATCAAGAAGATCGGCTACAACCCGGCCACCGTGCCCTTCGTGCCCATCT
CGGGCTGGCACGGCGACAACATGCTGGAGCCCTCCCCCAACATGCCCTGGTTCAAGGGCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61824376|ref|XP_593216.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61824376|ref|XP_593216.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               597-714, - strand, RNAz p=0.849006

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               597-714, - strand, RNAz p=0.849006

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               81-714, gnl|bosTau2|chr10 (14624133-14623503)
               

               
               81-714, gnl|Hg17|chr7 (22324858-22324226)
               

               
               81-714, gnl|Mm7|chr2 (40563063-40563671)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               81-714, gnl|bosTau2|chr10 (14624133-14623503)
               

               
               81-714, gnl|Hg17|chr7 (22324858-22324226)
               

               
               81-714, gnl|Mm7|chr2 (40563063-40563671)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               ebs (0.828108)
               

               
               mas (0.210305)
               

               
               nep (0.183925)
               

               
               che (0.136314)
               

               
               ecc (0.115035)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.828108)
               

               
               mas (0.210305)
               

               
               nep (0.183925)
               

               
               che (0.136314)
               

               
               ecc (0.115035)

	81-714, gnl\|bosTau2\|chr10 (14624133-14623503)
	81-714, gnl\|Hg17\|chr7 (22324858-22324226)
	81-714, gnl\|Mm7\|chr2 (40563063-40563671)

	ebs (0.828108)
	mas (0.210305)
	nep (0.183925)
	che (0.136314)
	ecc (0.115035)